| Thiol-linked alkylation of RNA to assess expression dynamics VA Herzog, B Reichholf, T Neumann, P Rescheneder, P Bhat, TR Burkard, ... Nature methods 14 (12), 1198-1204, 2017 | 463 | 2017 |
| Small RNAs are trafficked from the epididymis to developing mammalian sperm U Sharma, F Sun, CC Conine, B Reichholf, S Kukreja, VA Herzog, ... Developmental cell 46 (4), 481-494. e6, 2018 | 334 | 2018 |
| SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis M Muhar, A Ebert, T Neumann, C Umkehrer, J Jude, C Wieshofer, ... Science 360 (6390), 800-805, 2018 | 305 | 2018 |
| Time-resolved small RNA sequencing unravels the molecular principles of microRNA homeostasis B Reichholf, VA Herzog, N Fasching, RA Manzenreither, I Sowemimo, ... Molecular cell 75 (4), 756-768. e7, 2019 | 149 | 2019 |
| Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways S Metze, VA Herzog, MD Ruepp, O Mühlemann Rna 19 (10), 1432-1448, 2013 | 145 | 2013 |
| A strand-specific switch in noncoding transcription switches the function of a Polycomb/Trithorax response element VA Herzog, A Lempradl, J Trupke, H Okulski, C Altmutter, F Ruge, ... Nature genetics 46 (9), 973-981, 2014 | 110 | 2014 |
| Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets T Neumann, VA Herzog, M Muhar, A von Haeseler, J Zuber, SL Ameres, ... BMC bioinformatics 20, 1-16, 2019 | 88 | 2019 |
| Uridylation of RNA hairpins by tailor confines the emergence of microRNAs in Drosophila MM Reimão-Pinto, V Ignatova, TR Burkard, JH Hung, RA Manzenreither, ... Molecular cell 59 (2), 203-216, 2015 | 71 | 2015 |
| SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting W Matsushima, VA Herzog, T Neumann, K Gapp, J Zuber, SL Ameres, ... Development 145 (13), dev164640, 2018 | 35 | 2018 |
| Approaching the golden fleece a molecule at a time: biophysical insights into Argonaute-Instructed nucleic acid interactions VA Herzog, SL Ameres Molecular cell 59 (1), 4-7, 2015 | 18 | 2015 |
| NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation M Huth, L Santini, E Galimberti, J Ramesmayer, F Titz-Teixeira, R Sehlke, ... Genes & Development 36 (5-6), 348-367, 2022 | 17 | 2022 |
| Sequencing cell-type-specific transcriptomes with SLAM-ITseq W Matsushima, VA Herzog, T Neumann, K Gapp, J Zuber, SL Ameres, ... Nature protocols 14 (8), 2261-2278, 2019 | 15 | 2019 |
| SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis P Bhat, LE Cabrera-Quio, VA Herzog, N Fasching, A Pauli, SL Ameres Cell Reports 42 (2), 2023 | 12 | 2023 |
| Thiol-linked alkylation for the metabolic sequencing of RNA (SLAMseq) S Ameres, VA Herzog, B Reichholf | 8 | 2017 |
| Determining mRNA stability by metabolic RNA labeling and chemical nucleoside conversion VA Herzog, N Fasching, SL Ameres The Eukaryotic RNA Exosome: Methods and Protocols, 169-189, 2020 | 6 | 2020 |
| Thiol-linked alkylation for the metabolic sequencing of RNA VA Herzog, B Reichholf, T Neumann, P Rescheneder, P Bhat, TR Burkard, ... bioRxiv, 177642, 2017 | 4 | 2017 |
| SLAMseq resolves the kinetics of maternal and zygotic gene expression in early zebrafish embryogenesis P Bhat, LE Cabrera-Quio, VA Herzog, N Fasching, A Pauli, SL Ameres bioRxiv, 2022.06. 01.494399, 2022 | 3 | 2022 |
| Systematic refinement of gene annotations by parsing mRNA 3′ end sequencing datasets P Bhat, TR Burkard, VA Herzog, A Pauli, SL Ameres Methods in enzymology 655, 205-223, 2021 | 3 | 2021 |
| NMD is required for timely cell fate transitions by fine-tuning gene expression and controlling translation E Galimberti, R Sehlke, M Huth, M Garmhausen, M Romeike, ... bioRxiv, 2020.07. 07.180133, 2020 | 1 | 2020 |
| Nucleic acid modification and identification method SL Ameres, B Reichholf, VA Herzog, J Zuber, M Muhar US Patent 11,859,248, 2024 | | 2024 |
