Vito RT Zanotelli

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Bernd BodenmillerDual Professor University of Zurich and ETH Zurich. Director, Department of Quantitative BiomedicineVerified email at uzh.ch
Jana R FischerPhD student, University of ZurichVerified email at uzh.ch
Hartland Warren JacksonInvestigator, Lunenfeld-Tanenbaum Research Institute, Mount Sinai HospitalVerified email at lunenfeld.ca
Daniel Schulz, PhDSenior Research Associate, University of ZurichVerified email at uzh.ch
Denis SchapiroGroup Leader at the Heidelberg University HospitalVerified email at bioquant.uni-heidelberg.de
Stéphane ChevrierUniversity of ZurichVerified email at uzh.ch
H Raza AliGroup Leader, CRUK Cambridge Institute, University of CambridgeVerified email at cruk.cam.ac.uk
Xiaokang LunWyss Institute, Harvard UniversityVerified email at wyss.harvard.edu
Oliver RinnerCEO BiognosysVerified email at biognosys.ch
Lukas ReiterCTO, Biognosys AGVerified email at biognosys.com
Tejas GandhiBiognosysVerified email at biognosys.com
Helena L. CrowellPhD candidate, University of Zurich, SwitzerlandVerified email at uzh.ch
Raul CatenaVisiting Scientist, IBM ResearchVerified email at zurich.ibm.com
Michael B. StadlerHead of Computational Biology, Friedrich Miescher Institute, Basel, SwitzerlandVerified email at fmi.ch
Olga VitekProfessor, Khoury College of Computer Sciences, Northeastern UniversityVerified email at neu.edu
David BotsteinPrinceton UniversityVerified email at princeton.edu
Junyoung O. ParkUCLAVerified email at ucla.edu
John D. StoreyProfessor, Princeton UniversityVerified email at princeton.edu
Stephan NeuhaussProfessor for Neurobiology - Universität ZürichVerified email at imls.uzh.ch

Vito RT Zanotelli

University Children's Hospital Zurich/University of Zurich

Verified email at kispi.uzh.ch

Systems Biology


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An immune atlas of clear cell renal cell carcinoma S Chevrier, JH Levine, VRT Zanotelli, K Silina, D Schulz, M Bacac, ... Cell 169 (4), 736-749. e18, 2017	817	2017
Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues*[S] R Bruderer, OM Bernhardt, T Gandhi, SM Miladinović, LY Cheng, ... Molecular & Cellular Proteomics 14 (5), 1400-1410, 2015	811	2015
The single-cell pathology landscape of breast cancer HW Jackson, JR Fischer, VRT Zanotelli, HR Ali, R Mechera, SD Soysal, ... Nature 578 (7796), 615-620, 2020	561	2020
histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data D Schapiro, HW Jackson, S Raghuraman, JR Fischer, VRT Zanotelli, ... Nature methods 14 (9), 873-876, 2017	431	2017
Compensation of signal spillover in suspension and imaging mass cytometry S Chevrier, HL Crowell, VRT Zanotelli, S Engler, MD Robinson, ... Cell systems 6 (5), 612-620. e5, 2018	263	2018
Systems-level analysis of mechanisms regulating yeast metabolic flux SR Hackett, VRT Zanotelli, W Xu, J Goya, JO Park, DH Perlman, ... Science 354 (6311), aaf2786, 2016	261	2016
Simultaneous multiplexed imaging of mRNA and proteins with subcellular resolution in breast cancer tissue samples by mass cytometry D Schulz, VRT Zanotelli, JR Fischer, D Schapiro, S Engler, XK Lun, ... Cell systems 6 (1), 25-36. e5, 2018	245	2018
A map of human type 1 diabetes progression by imaging mass cytometry N Damond, S Engler, VRT Zanotelli, D Schapiro, CH Wasserfall, ... Cell metabolism 29 (3), 755-768. e5, 2019	208	2019
Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer HR Ali, HW Jackson, VRT Zanotelli, E Danenberg, JR Fischer, H Bardwell, ... Nature Cancer 1 (2), 163-175, 2020	184	2020
In-depth characterization of monocyte-derived macrophages using a mass cytometry-based phagocytosis assay D Schulz, Y Severin, VRT Zanotelli, B Bodenmiller Scientific reports 9 (1), 1925, 2019	134	2019
Breast tumor microenvironment structures are associated with genomic features and clinical outcome E Danenberg, H Bardwell, VRT Zanotelli, E Provenzano, SF Chin, ... Nature genetics 54 (5), 660-669, 2022	66	2022
Long‐term exposure to bis(2‐ethylhexyl)phthalate (DEHP) inhibits growth of guppy fish (Poecilia reticulata) VRT Zanotelli, SCF Neuhauss, MU Ehrengruber Journal of Applied Toxicology: An International Journal 30 (1), 29-33, 2010	57	2010
CATALYST: Cytometry dATa anALYSis Tools HL Crowell, VRT Zanotelli, S Chevrier, MD Robinson, B Bodenmiller Bioconductor version: Release (3.11) 10, B9, 2020	44	2020
Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry XK Lun, VRT Zanotelli, JD Wade, D Schapiro, M Tognetti, N Dobberstein, ... Nature biotechnology 35 (2), 164-172, 2017	43	2017
Analysis of the human kinome and phosphatome by mass cytometry reveals overexpression-induced effects on cancer-related signaling XK Lun, D Szklarczyk, A Gábor, N Dobberstein, VRT Zanotelli, ... Molecular cell 74 (5), 1086-1102. e5, 2019	30	2019
A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids VRT Zanotelli, M Leutenegger, XK Lun, F Georgi, N de Souza, ... Molecular Systems Biology 16 (12), e9798, 2020	18	2020
A flexible image segmentation pipeline for heterogeneous multiplexed tissue images based on pixel classification VRT Zanotelli, B Bodenmiller	2	2019
Investigation of intra-and intercellular signaling through mass cytometry based single cell methods VRT Zanotelli University of Zurich, 2019		2019
Optimized spectral library generation for HRM/DIA/SWATH as implemented within Spectronaut T Gandhi, RM Bruderer, C Escher, M Bober, V Zanotelli, OM Bernhardt, ...

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