| Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017 | 1031 | 2017 |
| An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar ND Grubaugh, K Gangavarapu, J Quick, NL Matteson, JG De Jesus, ... Genome biology 20, 1-19, 2019 | 772 | 2019 |
| CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer M Griffith, NC Spies, K Krysiak, JF McMichael, AC Coffman, AM Danos, ... Nature genetics 49 (2), 170-174, 2017 | 530 | 2017 |
| Zika virus evolution and spread in the Americas HC Metsky, CB Matranga, S Wohl, SF Schaffner, CA Freije, SM Winnicki, ... Nature 546 (7658), 411-415, 2017 | 423 | 2017 |
| Genomic epidemiology reveals multiple introductions of Zika virus into the United States ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ... Nature 546 (7658), 401-405, 2017 | 362 | 2017 |
| Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California X Deng, W Gu, S Federman, L Du Plessis, OG Pybus, NR Faria, C Wang, ... Science 369 (6503), 582-587, 2020 | 270 | 2020 |
| Emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ... Cell 184 (10), 2587-2594. e7, 2021 | 268 | 2021 |
| Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ... Nature 609 (7925), 101-108, 2022 | 248 | 2022 |
| A role for Fc function in therapeutic monoclonal antibody-mediated protection against Ebola virus BM Gunn, WH Yu, MM Karim, JM Brannan, AS Herbert, AZ Wec, ... Cell host & microbe 24 (2), 221-233. e5, 2018 | 210 | 2018 |
| Outbreak. info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations K Gangavarapu, AA Latif, JL Mullen, M Alkuzweny, E Hufbauer, G Tsueng, ... Nature methods 20 (4), 512-522, 2023 | 205 | 2023 |
| Systematic analysis of monoclonal antibodies against Ebola virus GP defines features that contribute to protection EO Saphire, SL Schendel, ML Fusco, K Gangavarapu, BM Gunn, AZ Wec, ... Cell 174 (4), 938-952. e13, 2018 | 188 | 2018 |
| The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2 JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich, JL Havens, ... Science 377 (6609), 960-966, 2022 | 173 | 2022 |
| Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ... MedRxiv, 2021 | 105 | 2021 |
| Travel surveillance and genomics uncover a hidden Zika outbreak during the waning epidemic ND Grubaugh, S Saraf, K Gangavarapu, A Watts, AL Tan, RJ Oidtman, ... Cell 178 (5), 1057-1071. e11, 2019 | 86 | 2019 |
| Ebola virus transmission initiated by relapse of systemic Ebola virus disease P Mbala-Kingebeni, C Pratt, M Mutafali-Ruffin, MG Pauthner, F Bile, ... New England Journal of Medicine 384 (13), 1240-1247, 2021 | 78 | 2021 |
| Inferring the risk factors behind the geographical spread and transmission of Zika in the Americas LM Gardner, A Bóta, K Gangavarapu, MUG Kraemer, ND Grubaugh PLoS neglected tropical diseases 12 (1), e0006194, 2018 | 78 | 2018 |
| Analysis of CD8+ T cell response during the 2013–2016 Ebola epidemic in West Africa S Sakabe, BM Sullivan, JN Hartnett, R Robles-Sikisaka, K Gangavarapu, ... Proceedings of the National Academy of Sciences 115 (32), E7578-E7586, 2018 | 61 | 2018 |
| Outbreak. info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources G Tsueng, JL Mullen, M Alkuzweny, M Cano, B Rush, E Haag, J Lin, ... Nature methods 20 (4), 536-540, 2023 | 50 | 2023 |
| Ontogeny of the B-and T-cell response in a primary Zika virus infection of a dengue-naive individual during the 2016 outbreak in Miami, FL MJ Ricciardi, DM Magnani, A Grifoni, YC Kwon, MJ Gutman, ... PLoS neglected tropical diseases 11 (12), e0006000, 2017 | 49 | 2017 |
| Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework S Dellicour, S Lequime, B Vrancken, MS Gill, P Bastide, K Gangavarapu, ... Nature communications 11 (1), 5620, 2020 | 48 | 2020 |
