Nathan Mih
Nathan Mih
Software Engineer @ Lygos, Inc.
Verified email at eng.ucsd.edu - Homepage
Title
Cited by
Cited by
Year
Recon3D enables a three-dimensional view of gene variation in human metabolism
E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ...
Nature biotechnology 36 (3), 272, 2018
1862018
i ML1515, a knowledgebase that computes Escherichia coli traits
JM Monk, CJ Lloyd, E Brunk, N Mih, A Sastry, Z King, R Takeuchi, ...
Nature biotechnology 35 (10), 904-908, 2017
1442017
Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis
JT Broddrick, BE Rubin, DG Welkie, N Du, N Mih, S Diamond, JJ Lee, ...
Proceedings of the National Academy of Sciences 113 (51), E8344-E8353, 2016
522016
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities
X Fang, A Sastry, N Mih, D Kim, J Tan, JT Yurkovich, CJ Lloyd, Y Gao, ...
Proceedings of the National Academy of Sciences 114 (38), 10286-10291, 2017
472017
Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance
ES Kavvas, E Catoiu, N Mih, JT Yurkovich, Y Seif, N Dillon, D Heckmann, ...
Nature communications 9 (1), 1-9, 2018
442018
Systems biology of the structural proteome
E Brunk, N Mih, J Monk, Z Zhang, EJ O’Brien, SE Bliven, K Chen, ...
BMC systems biology 10 (1), 1-16, 2016
352016
Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models
D Heckmann, CJ Lloyd, N Mih, Y Ha, DC Zielinski, ZB Haiman, ...
Nature communications 9 (1), 1-10, 2018
342018
Probing the selectivity and protein⋅ protein interactions of a nonreducing fungal polyketide synthase using mechanism-based crosslinkers
J Bruegger, B Haushalter, A Vagstad, G Shakya, N Mih, CA Townsend, ...
Chemistry & biology 20 (9), 1135-1146, 2013
272013
Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation
K Chen, Y Gao, N Mih, EJ O’Brien, L Yang, BO Palsson
Proceedings of the National Academy of Sciences 114 (43), 11548-11553, 2017
262017
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Dräger, K Chen, ...
Nucleic acids research 46 (20), 10682-10696, 2018
252018
A multi-scale computational platform to mechanistically assess the effect of genetic variation on drug responses in human erythrocyte metabolism
N Mih, E Brunk, A Bordbar, BO Palsson
PLoS computational biology 12 (7), e1005039, 2016
152016
ssbio: a Python framework for structural systems biology
N Mih, E Brunk, K Chen, E Catoiu, A Sastry, E Kavvas, JM Monk, Z Zhang, ...
Bioinformatics 34 (12), 2155-2157, 2018
122018
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa
X Fang, JM Monk, N Mih, B Du, AV Sastry, E Kavvas, Y Seif, L Smarr, ...
BMC systems biology 12 (1), 66, 2018
102018
Cellular responses to reactive oxygen species are predicted from molecular mechanisms
L Yang, N Mih, A Anand, JH Park, J Tan, JT Yurkovich, JM Monk, CJ Lloyd, ...
Proceedings of the National Academy of Sciences 116 (28), 14368-14373, 2019
9*2019
A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types
Y Seif, JM Monk, N Mih, H Tsunemoto, S Poudel, C Zuniga, J Broddrick, ...
PLoS computational biology 15 (1), e1006644, 2019
92019
Recon3D: A Resource Enabling A Three-Dimensional View of Gene Variation in Human Metabolism
E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Draeger, N Mih, F Gatto, ...
Nat Biotech,(Accepted), 2017
82017
Mechanisms for benzene dissociation through the excited state of t4 lysozyme l99a mutant
VA Feher, JM Schiffer, DJ Mermelstein, N Mih, LCT Pierce, ...
Biophysical journal 116 (2), 205-214, 2019
62019
The Staphylococcus aureus two-component system AgrAC displays four distinct genomic arrangements that delineate genomic virulence factor signatures
KS Choudhary, N Mih, J Monk, E Kavvas, JT Yurkovich, G Sakoulas, ...
Frontiers in microbiology 9, 1082, 2018
62018
Expanding the uses of genome‐scale models with protein structures
N Mih, BO Palsson
Molecular systems biology 15 (11), e8601, 2019
42019
Recon 3D: A resource enabling a three-dimensional view of human metabolism and disease
E Brunk, S Sahoo, D Zielinski, A Altunkaya, N Mih, A Prlic, A Sastry, ...
Abstracts of Papers of the American Chemical Society 253, 2017
12017
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Articles 1–20