| Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position JD Buenrostro, PG Giresi, LC Zaba, HY Chang, WJ Greenleaf Nature methods 10 (12), 1213-1218, 2013 | 6410 | 2013 |
| ATAC‐seq: a method for assaying chromatin accessibility genome‐wide JD Buenrostro, B Wu, HY Chang, WJ Greenleaf Current protocols in molecular biology 109 (1), 21.29. 1-21.29. 9, 2015 | 3511 | 2015 |
| Single-cell chromatin accessibility reveals principles of regulatory variation JD Buenrostro, B Wu, UM Litzenburger, D Ruff, ML Gonzales, MP Snyder, ... Nature 523 (7561), 486-490, 2015 | 2268 | 2015 |
| chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data AN Schep, B Wu, JD Buenrostro, WJ Greenleaf Nature methods 14 (10), 975-978, 2017 | 1265 | 2017 |
| Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution MR Corces, JD Buenrostro, B Wu, PG Greenside, SM Chan, JL Koenig, ... Nature genetics 48 (10), 1193-1203, 2016 | 1156 | 2016 |
| Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types HK Finucane, YA Reshef, V Anttila, K Slowikowski, A Gusev, A Byrnes, ... Nature genetics 50 (4), 621-629, 2018 | 976 | 2018 |
| Chromatin potential identified by shared single-cell profiling of RNA and chromatin S Ma, B Zhang, LM LaFave, AS Earl, Z Chiang, Y Hu, J Ding, A Brack, ... Cell 183 (4), 1103-1116. e20, 2020 | 823 | 2020 |
| Integrated single-cell analysis maps the continuous regulatory landscape of human hematopoietic differentiation JD Buenrostro, MR Corces, CA Lareau, B Wu, AN Schep, MJ Aryee, ... Cell 173 (6), 1535-1548. e16, 2018 | 680 | 2018 |
| Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram T Biancalani, G Scalia, L Buffoni, R Avasthi, Z Lu, A Sanger, N Tokcan, ... Nature methods 18 (11), 1352-1362, 2021 | 518 | 2021 |
| Lineage tracing in humans enabled by mitochondrial mutations and single-cell genomics LS Ludwig, CA Lareau, JC Ulirsch, E Christian, C Muus, LH Li, K Pelka, ... Cell 176 (6), 1325-1339. e22, 2019 | 475 | 2019 |
| Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility CA Lareau, FM Duarte, JG Chew, VK Kartha, ZD Burkett, AS Kohlway, ... Nature Biotechnology 37 (8), 916-924, 2019 | 437 | 2019 |
| Induction and transcriptional regulation of the co-inhibitory gene module in T cells N Chihara, A Madi, T Kondo, H Zhang, N Acharya, M Singer, J Nyman, ... Nature 558 (7710), 454-459, 2018 | 432 | 2018 |
| Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries ML Carpenter, JD Buenrostro, C Valdiosera, H Schroeder, ME Allentoft, ... The American Journal of Human Genetics 93 (5), 852-864, 2013 | 399 | 2013 |
| Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions AN Schep, JD Buenrostro, SK Denny, K Schwartz, G Sherlock, ... Genome research 25 (11), 1757-1770, 2015 | 384 | 2015 |
| The cis-regulatory atlas of the mouse immune system H Yoshida, CA Lareau, RN Ramirez, SA Rose, B Maier, A Wroblewska, ... Cell 176 (4), 897-912. e20, 2019 | 379 | 2019 |
| Transposition of native chromatin for personal epigenomics P Giresi, JD Buenrostro, HY Chang, WJ Greenleaf US Patent 10,059,989, 2018 | 319 | 2018 |
| Assessment of computational methods for the analysis of single-cell ATAC-seq data H Chen, C Lareau, T Andreani, ME Vinyard, SP Garcia, K Clement, ... Genome biology 20, 1-25, 2019 | 293 | 2019 |
| Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells B Zhang, S Ma, I Rachmin, M He, P Baral, S Choi, WA Gonçalves, ... Nature 577 (7792), 676-681, 2020 | 273 | 2020 |
| ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing X Chen, Y Shen, W Draper, JD Buenrostro, U Litzenburger, SW Cho, ... Nature methods 13 (12), 1013-1020, 2016 | 262 | 2016 |
| Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes JD Buenrostro, CL Araya, LM Chircus, CJ Layton, HY Chang, MP Snyder, ... Nature biotechnology 32 (6), 562-568, 2014 | 262 | 2014 |
