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Sean Bendall
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Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
SC Bendall, EF Simonds, P Qiu, DA El-ad, PO Krutzik, R Finck, ...
Science 332 (6030), 687-696, 2011
24892011
Data-driven phenotypic dissection of AML reveals progenitor-like cells that correlate with prognosis
JH Levine, EF Simonds, SC Bendall, KL Davis, DA El-ad, MD Tadmor, ...
Cell 162 (1), 184-197, 2015
21532015
viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
ED Amir, KL Davis, MD Tadmor, EF Simonds, JH Levine, SC Bendall, ...
Nature biotechnology 31 (6), 545-552, 2013
16212013
Multiplexed ion beam imaging of human breast tumors
M Angelo, SC Bendall, R Finck, MB Hale, C Hitzman, AD Borowsky, ...
Nature medicine 20 (4), 436-442, 2014
10952014
Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE
P Qiu, EF Simonds, SC Bendall, KD Gibbs Jr, RV Bruggner, ...
Nature biotechnology 29 (10), 886-891, 2011
10742011
Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
SC Bendall, KL Davis, ED Amir, MD Tadmor, EF Simonds, TJ Chen, ...
Cell 157 (3), 714-725, 2014
9932014
Systemic immunity is required for effective cancer immunotherapy
MH Spitzer, Y Carmi, NE Reticker-Flynn, SS Kwek, D Madhireddy, ...
Cell 168 (3), 487-502. e15, 2017
9242017
A structured tumor-immune microenvironment in triple negative breast cancer revealed by multiplexed ion beam imaging
L Keren, M Bosse, D Marquez, R Angoshtari, S Jain, S Varma, SR Yang, ...
Cell 174 (6), 1373-1387. e19, 2018
9052018
A deep profiler's guide to cytometry
SC Bendall, GP Nolan, M Roederer, PK Chattopadhyay
Trends in immunology 33 (7), 323-332, 2012
7812012
IGF and FGF cooperatively establish the regulatory stem cell niche of pluripotent human cells in vitro
SC Bendall, MH Stewart, P Menendez, D George, K Vijayaragavan, ...
Nature 448 (7157), 1015-1021, 2007
7442007
Normalization of mass cytometry data with bead standards
R Finck, EF Simonds, A Jager, S Krishnaswamy, K Sachs, W Fantl, ...
Cytometry Part A 83 (5), 483-494, 2013
7432013
Wishbone identifies bifurcating developmental trajectories from single-cell data
M Setty, MD Tadmor, S Reich-Zeliger, O Angel, TM Salame, P Kathail, ...
Nature biotechnology 34 (6), 637-645, 2016
6512016
Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes
EW Newell, N Sigal, SC Bendall, GP Nolan, MM Davis
Immunity 36 (1), 142-152, 2012
6482012
Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators
B Bodenmiller, ER Zunder, R Finck, TJ Chen, ES Savig, RV Bruggner, ...
Nature biotechnology 30 (9), 858-867, 2012
6042012
Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning
NF Greenwald, G Miller, E Moen, A Kong, A Kagel, T Dougherty, ...
Nature biotechnology 40 (4), 555-565, 2022
5982022
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics
AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ...
Nature methods 6 (6), 423-430, 2009
4102009
MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure
L Keren, M Bosse, S Thompson, T Risom, K Vijayaragavan, E McCaffrey, ...
Science advances 5 (10), eaax5851, 2019
3342019
Clinical recovery from surgery correlates with single-cell immune signatures
B Gaudillière, GK Fragiadakis, RV Bruggner, M Nicolau, R Finck, M Tingle, ...
Science translational medicine 6 (255), 255ra131-255ra131, 2014
3312014
The transcriptional landscape of αβ T cell differentiation
M Mingueneau, T Kreslavsky, D Gray, T Heng, R Cruse, J Ericson, ...
Nature immunology 14 (6), 619-632, 2013
3052013
From single cells to deep phenotypes in cancer
SC Bendall, GP Nolan
Nature biotechnology 30 (7), 639-647, 2012
2812012
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