João Carlos Setubal

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Nalvo F Almeida JrProfessor of Bioinformatics, Federal University of Mato Grosso do Sul, BrazilVerified email at facom.ufms.br
Aline Maria da SilvaUniversidade de São PauloVerified email at iq.usp.br
Luciano Antonio DigiampietriUniversidade de São PauloVerified email at usp.br
Sergio Verjovski-AlmeidaProfessor Titular Senior, Instituto de Química, Universidade de São PauloVerified email at iq.usp.br
Emmanuel Dias-NetoA.C.Camargo Cancer CenterVerified email at cipe.accamargo.org.br
Andrew Maltez ThomasVerified email at unitn.it
Brett TylerOregon State UniversityVerified email at vt.edu
Joaquim Martins JuniorCentro Nacional de Pesquisa em Energia e Materias, LNBRVerified email at lnbr.cnpem.br
Ricardo Jose GiordanoUniversidade de Sao PauloVerified email at iq.usp.br
J. B. Jones + Jeffrey Jonesuniversity of floridaVerified email at ufl.edu
Jesus Aparecido FerroUniversidade Estadual Paulista/UNESP - Faculdade de Ciências Agrárias e Veterinárias da JaboticabalVerified email at fcav.unesp.br
Boris A. VinatzerProfessor, SPES, Virginia TechVerified email at vt.edu
Nian WangJ. R. (Rip) Graves Eminent Scholar Endowed Chair, IFAS, University of Florida; EiC, PhytopathologyVerified email at ufl.edu
Andrew S WarrenResearch Assistant Professor at University of Virginia, Biocomplexity Institute & InitiativeVerified email at vt.edu
David HaakeHealth Sciences Clinical Professor of Medicine, UCLAVerified email at ucla.edu
Patricia C. Dos SantosWake Forest UniversityVerified email at wfu.edu
Ray DixonProfessor of Molecular Microbiology. John Innes CentreVerified email at jic.ac.uk
Derek W WoodSeattle Pacific UniversityVerified email at spu.edu
Richard J. AndersonProfessor of Computer Science and Engineering, University of WashingtonVerified email at cs.washington.edu
Barry S GoldmanPluton BiosciencesVerified email at plutonbio.com

João Carlos Setubal

Professor of Bioinformatics, University of Sao Paulo

Verified email at iq.usp.br - Homepage

Microbiomes Genomics Metagenomics Transcriptomics Bioinformatics


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Comparison of the genomes of two Xanthomonas pathogens with differing host specificities ACR da Silva, JA Ferro, FDC Reinach, CS Farah, LR Furlan, RB Quaggio, ... Nature 417 (6887), 459-463, 2002	1418	2002
The genome of woodland strawberry (Fragaria vesca) V Shulaev, DJ Sargent, RN Crowhurst, TC Mockler, O Folkerts, ... Nature genetics 43 (2), 109-116, 2011	1363	2011
Introduction to computational molecular biology JC Setubal, J Meidanis, . ̤ Setubal-Meidanis PWS Pub., 1997	1256	1997
The genome sequence of the plant pathogen Xylella fastidiosa AJG Simpson, FC Reinach, P Arruda, FA Abreu, M Acencio, R Alvarenga, ... Nature 406 (6792), 151-157, 2000	1119	2000
The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58 DW Wood, JC Setubal, R Kaul, DE Monks, JP Kitajima, VK Okura, Y Zhou, ... science 294 (5550), 2317-2323, 2001	1001	2001
Support vector machines: Theory and applications T Evgeniou, M Pontil Advanced course on artificial intelligence, 249-257, 1999	865*	1999
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019	778	2019
Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni S Verjovski-Almeida, R DeMarco, EAL Martins, PEM Guimarães, ... Nature genetics 35 (2), 148-157, 2003	618	2003
Comparative Genomics of Two Leptospira interrogans Serovars Reveals Novel Insights into Physiology and Pathogenesis A Nascimento, AI Ko, EAL Martins, CB Monteiro-Vitorello, PL Ho, ... Journal of bacteriology 186 (7), 2164-2172, 2004	576	2004
Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology TT Tseng, BM Tyler, JC Setubal BMC microbiology 9, 1-9, 2009	573	2009
Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes PC Dos Santos, Z Fang, SW Mason, JC Setubal, R Dixon BMC genomics 13, 1-12, 2012	526	2012
Comparative Analyses of the Complete Genome Sequences of Pierce's Disease and Citrus Variegated Chlorosis Strains of Xylella fastidiosa MA Van Sluys, MC De Oliveira, CB Monteiro-Vitorello, CY Miyaki, ... Journal of bacteriology 185 (3), 1018-1026, 2003	404	2003
Genome Sequence of Azotobacter vinelandii, an Obligate Aerobe Specialized To Support Diverse Anaerobic Metabolic Processes JC Setubal, P Dos Santos, BS Goldman, H Ertesvag, G Espin, LM Rubio, ... Journal of bacteriology 191 (14), 4534-4545, 2009	360	2009
The Candidatus Liberibacter–Host Interface: Insights into Pathogenesis Mechanisms and Disease Control N Wang, EA Pierson, JC Setubal, J Xu, JG Levy, Y Zhang, J Li, LT Rangel, ... Annual review of phytopathology 55 (1), 451-482, 2017	317	2017
Butyrate protects mice from Clostridium difficile-induced colitis through an HIF-1-dependent mechanism JL Fachi, J de Souza Felipe, LP Pral, BK da Silva, RO Corrêa, ... Cell reports 27 (3), 750-761. e7, 2019	297	2019
Genome features of Leptospira interrogans serovar Copenhageni A Nascimento, S Verjovski-Almeida, MA Van Sluys, CB Monteiro-Vitorello, ... Brazilian Journal of Medical and Biological Research 37, 459-477, 2004	285	2004
Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria SC Slater, BS Goldman, B Goodner, JC Setubal, SK Farrand, EW Nester, ... Journal of bacteriology 191 (8), 2501-2511, 2009	281	2009
The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity R Cai, J Lewis, S Yan, H Liu, CR Clarke, F Campanile, NF Almeida, ... PLoS pathogens 7 (8), e1002130, 2011	277	2011
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics LP Antunes, LF Martins, RV Pereira, AM Thomas, D Barbosa, LN Lemos, ... Scientific reports 6 (1), 38915, 2016	257	2016
Lipoprotein computational prediction in spirochaetal genomes JC Setubal, M Reis, J Matsunaga, DA Haake Microbiology 152 (1), 113-121, 2006	250	2006

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