Christopher Henry
Christopher Henry
Computational Biologist, Argonne National Laboratory
Verified email at mcs.anl.gov
Title
Cited by
Cited by
Year
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ...
Molecular systems biology 3 (1), 121, 2007
14782007
High-throughput generation, optimization and analysis of genome-scale metabolic models
CS Henry, M DeJongh, AA Best, PM Frybarger, B Linsay, RL Stevens
Nature biotechnology 28 (9), 977-982, 2010
8222010
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
5482017
Thermodynamics-based metabolic flux analysis
CS Henry, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 92 (5), 1792-1805, 2007
5452007
Group contribution method for thermodynamic analysis of complex metabolic networks
MD Jankowski, CS Henry, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 95 (3), 1487-1499, 2008
3952008
Exploring the diversity of complex metabolic networks
V Hatzimanikatis, C Li, JA Ionita, CS Henry, MD Jankowski, LJ Broadbelt
Bioinformatics 21 (8), 1603-1609, 2005
3352005
Competitive and cooperative metabolic interactions in bacterial communities
S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ...
Nature communications 2 (1), 1-7, 2011
3082011
Genome-scale thermodynamic analysis of Escherichia coli metabolism
CS Henry, MD Jankowski, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 90 (4), 1453-1461, 2006
2392006
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566, 2018
169*2018
iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations
CS Henry, JF Zinner, MP Cohoon, RL Stevens
Genome Biol 10 (6), R69, 2009
1622009
Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3‐hydroxypropanoate
CS Henry, LJ Broadbelt, V Hatzimanikatis
Biotechnology and bioengineering 106 (3), 462-473, 2010
1532010
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ...
PloS one 7 (10), e48053, 2012
1282012
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics
JG Jeffryes, RL Colastani, M Elbadawi-Sidhu, T Kind, TD Niehaus, ...
Journal of cheminformatics 7 (1), 44, 2015
1202015
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED
S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry
Systems Metabolic Engineering, 17-45, 2013
1062013
Computational discovery of biochemical routes to specialty chemicals
C Li, CS Henry, MD Jankowski, JA Ionita, V Hatzimanikatis, LJ Broadbelt
Chemical engineering science 59 (22-23), 5051-5060, 2004
932004
Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset
PE Larsen, FR Collart, D Field, F Meyer, KP Keegan, CS Henry, ...
Microbial informatics and experimentation 1 (1), 1-11, 2011
782011
Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model
K Tanaka, CS Henry, JF Zinner, E Jolivet, MP Cohoon, F Xia, V Bidnenko, ...
Nucleic acids research 41 (1), 687-699, 2013
742013
Plant B vitamin pathways and their compartmentation: a guide for the perplexed
S Gerdes, C Lerma-Ortiz, O Frelin, SMD Seaver, CS Henry, ...
Journal of experimental botany 63 (15), 5379-5395, 2012
722012
High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource
SMD Seaver, S Gerdes, O Frelin, C Lerma-Ortiz, LMT Bradbury, R Zallot, ...
Proceedings of the National Academy of Sciences 111 (26), 9645-9650, 2014
662014
Frontiers in metabolic reconstruction and modeling of plant genomes
SMD Seaver, CS Henry, AD Hanson
Journal of experimental botany 63 (6), 2247-2258, 2012
652012
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Articles 1–20