Audrey Michel
Audrey Michel
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Cited by
Cited by
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences
IP Ivanov, AE Firth, AM Michel, JF Atkins, PV Baranov
Nucleic acids research 39 (10), 4220-4234, 2011
Observation of dually decoded regions of the human genome using ribosome profiling data
AM Michel, KR Choudhury, AE Firth, NT Ingolia, JF Atkins, PV Baranov
Genome research 22 (11), 2219-2229, 2012
GWIPS-viz: development of a ribo-seq genome browser
AM Michel, G Fox, A M. Kiran, C De Bo, PBF O’Connor, SM Heaphy, ...
Nucleic acids research 42 (D1), D859-D864, 2014
Ribosome profiling: a Hi‐Def monitor for protein synthesis at the genome‐wide scale
AM Michel, PV Baranov
Wiley Interdisciplinary Reviews: RNA 4 (5), 473-490, 2013
RiboGalaxy: a browser based platform for the alignment, analysis and visualization of ribosome profiling data
AM Michel, JPA Mullan, V Velayudhan, PBF O'Connor, CA Donohue, ...
RNA biology 13 (3), 316-319, 2016
Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning
AM Michel, DE Andreev, PV Baranov
BMC bioinformatics 15 (1), 1-10, 2014
AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation
MM Yordanova, G Loughran, AV Zhdanov, M Mariotti, SJ Kiniry, ...
Nature 553 (7688), 356-360, 2018
Mutant Huntingtin stalls ribosomes and represses protein synthesis in a cellular model of Huntington disease
M Eshraghi, PP Karunadharma, J Blin, N Shahani, EP Ricci, A Michel, ...
Nature Communications 12 (1), 1461, 2021
GWIPS-viz: 2018 update
AM Michel, SJ Kiniry, PBF O’Connor, JP Mullan, PV Baranov
Nucleic acids research 46 (D1), D823-D830, 2018
Trips-Viz: a transcriptome browser for exploring Ribo-Seq data
SJ Kiniry, PBF O’Connor, AM Michel, PV Baranov
Nucleic acids research 47 (D1), D847-D852, 2019
HMGB1 coordinates SASP‐related chromatin folding and RNA homeostasis on the path to senescence
K Sofiadis, N Josipovic, M Nikolic, Y Kargapolova, N Übelmesser, ...
Molecular Systems Biology 17 (6), e9760, 2021
Computational methods for ribosome profiling data analysis
SJ Kiniry, AM Michel, PV Baranov
Wiley Interdisciplinary Reviews: RNA 11 (3), e1577, 2020
Hepatitis C Virus downregulates core subunits of oxidative phosphorylation, reminiscent of the Warburg effect in cancer cells
GK Gerresheim, E Roeb, AM Michel, M Niepmann
Cells 8 (11), 1410, 2019
TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response
DE Andreev, M Arnold, SJ Kiniry, G Loughran, AM Michel, D Rachinskii, ...
elife 7, e32563, 2018
Translation initiation from conserved non-AUG codons provides additional layers of regulation and coding capacity
IP Ivanov, J Wei, SZ Caster, KM Smith, AM Michel, Y Zhang, AE Firth, ...
MBio 8 (3), 10.1128/mbio. 00844-17, 2017
Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF
G Loughran, AV Zhdanov, MS Mikhaylova, FN Rozov, PN Datskevich, ...
Proceedings of the National Academy of Sciences 117 (40), 24936-24946, 2020
Improving data workflow systems with cloud services and use of open data for bioinformatics research
MR Karim, A Michel, A Zappa, P Baranov, R Sahay, ...
Briefings in bioinformatics 19 (5), 1035-1050, 2018
GWIPS‐viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms
AM Michel, AM Ahern, CA Donohue, PV Baranov
Proteomics 15 (14), 2410-2416, 2015
PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data
R Kumari, AM Michel, PV Baranov
Rna 24 (10), 1297-1304, 2018
RNA-Seq and CyTOF immuno-profiling of regenerating lacrimal glands identifies a novel subset of cells expressing muscle-related proteins
D Hawley, J Ding, S Thotakura, S Haskett, H Aluri, C Kublin, A Michel, ...
PLoS One 12 (6), e0179385, 2017
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