| Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences IP Ivanov, AE Firth, AM Michel, JF Atkins, PV Baranov Nucleic acids research 39 (10), 4220-4234, 2011 | 228 | 2011 |
| Observation of dually decoded regions of the human genome using ribosome profiling data AM Michel, KR Choudhury, AE Firth, NT Ingolia, JF Atkins, PV Baranov Genome research 22 (11), 2219-2229, 2012 | 218 | 2012 |
| GWIPS-viz: development of a ribo-seq genome browser AM Michel, G Fox, A M. Kiran, C De Bo, PBF O’Connor, SM Heaphy, ... Nucleic acids research 42 (D1), D859-D864, 2014 | 217 | 2014 |
| Ribosome profiling: a Hi‐Def monitor for protein synthesis at the genome‐wide scale AM Michel, PV Baranov Wiley Interdisciplinary Reviews: RNA 4 (5), 473-490, 2013 | 105 | 2013 |
| RiboGalaxy: a browser based platform for the alignment, analysis and visualization of ribosome profiling data AM Michel, JPA Mullan, V Velayudhan, PBF O'Connor, CA Donohue, ... RNA biology 13 (3), 316-319, 2016 | 94 | 2016 |
| Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning AM Michel, DE Andreev, PV Baranov BMC bioinformatics 15 (1), 1-10, 2014 | 67 | 2014 |
| AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation MM Yordanova, G Loughran, AV Zhdanov, M Mariotti, SJ Kiniry, ... Nature 553 (7688), 356-360, 2018 | 65 | 2018 |
| Mutant Huntingtin stalls ribosomes and represses protein synthesis in a cellular model of Huntington disease M Eshraghi, PP Karunadharma, J Blin, N Shahani, EP Ricci, A Michel, ... Nature Communications 12 (1), 1461, 2021 | 64 | 2021 |
| GWIPS-viz: 2018 update AM Michel, SJ Kiniry, PBF O’Connor, JP Mullan, PV Baranov Nucleic acids research 46 (D1), D823-D830, 2018 | 54 | 2018 |
| Trips-Viz: a transcriptome browser for exploring Ribo-Seq data SJ Kiniry, PBF O’Connor, AM Michel, PV Baranov Nucleic acids research 47 (D1), D847-D852, 2019 | 48 | 2019 |
| HMGB1 coordinates SASP‐related chromatin folding and RNA homeostasis on the path to senescence K Sofiadis, N Josipovic, M Nikolic, Y Kargapolova, N Übelmesser, ... Molecular Systems Biology 17 (6), e9760, 2021 | 39 | 2021 |
| Computational methods for ribosome profiling data analysis SJ Kiniry, AM Michel, PV Baranov Wiley Interdisciplinary Reviews: RNA 11 (3), e1577, 2020 | 31 | 2020 |
| Hepatitis C Virus downregulates core subunits of oxidative phosphorylation, reminiscent of the Warburg effect in cancer cells GK Gerresheim, E Roeb, AM Michel, M Niepmann Cells 8 (11), 1410, 2019 | 27 | 2019 |
| TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response DE Andreev, M Arnold, SJ Kiniry, G Loughran, AM Michel, D Rachinskii, ... elife 7, e32563, 2018 | 27 | 2018 |
| Translation initiation from conserved non-AUG codons provides additional layers of regulation and coding capacity IP Ivanov, J Wei, SZ Caster, KM Smith, AM Michel, Y Zhang, AE Firth, ... MBio 8 (3), 10.1128/mbio. 00844-17, 2017 | 26 | 2017 |
| Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF G Loughran, AV Zhdanov, MS Mikhaylova, FN Rozov, PN Datskevich, ... Proceedings of the National Academy of Sciences 117 (40), 24936-24946, 2020 | 25 | 2020 |
| Improving data workflow systems with cloud services and use of open data for bioinformatics research MR Karim, A Michel, A Zappa, P Baranov, R Sahay, ... Briefings in bioinformatics 19 (5), 1035-1050, 2018 | 25 | 2018 |
| GWIPS‐viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms AM Michel, AM Ahern, CA Donohue, PV Baranov Proteomics 15 (14), 2410-2416, 2015 | 25 | 2015 |
| PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data R Kumari, AM Michel, PV Baranov Rna 24 (10), 1297-1304, 2018 | 24 | 2018 |
| RNA-Seq and CyTOF immuno-profiling of regenerating lacrimal glands identifies a novel subset of cells expressing muscle-related proteins D Hawley, J Ding, S Thotakura, S Haskett, H Aluri, C Kublin, A Michel, ... PLoS One 12 (6), e0179385, 2017 | 22 | 2017 |
Pavel Baranov, "Pasha"Professor of Biomolecular Informatics, University College Cork, IrelandVerified email at ucc.ie
