Nicolas Rodriguez

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Michael HuckaCalifornia Institute of TechnologyVerified email at caltech.edu
Andreas DrägerJuniorprofessor for Computational Systems Biology of Infection and Antimicrobial-ResistanceVerified email at uni-tuebingen.de
Lukas EndlerCeMM, Research Center for Molecular Medicine of the Austrian Academy of SciencesVerified email at cemm.oeaw.ac.at
Clemens WrzodekRoche Innovation Center Penzberg. Previously: Center for Bioinformatics, Tübingen, GermanyVerified email at germancafe.de
Andreas ZellProfessor für Informatik, Universität TübingenVerified email at uni-tuebingen.de
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyVerified email at caltech.edu
Lu LiPostdoctoral researcher, AstraZeneca, UKVerified email at astrazeneca.com
Sarala M WimalaratneDataCiteVerified email at datacite.org
Melanie StefanProfessor of Physiology, Medical School BerlinVerified email at medicalschool-berlin.de
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamVerified email at sun.ac.za
Brett G. OlivierVU AmsterdamVerified email at vu.nl
Dagmar WaltemathProfessor of Medical InformaticsVerified email at uni-greifswald.de
Martin GolebiewskiHITS gGmbH, Heidelberg (Germany)Verified email at h-its.org
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Jean-Baptiste PettitCambridge University, EMBL-EBIVerified email at ebi.ac.uk
Claudine ChaouiyaI2M UMR 7373, Aix Marseille University (France)Verified email at univ-amu.fr
Chris MyersUniversity of UtahVerified email at ece.utah.edu
Finja Wrzodek (geb. Büchel)Researcher at Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, GermanyVerified email at uni-tuebingen.de
Florian MittagProfessor for Artificial Intelligence in Visual Computing at Coburg University of Applied SciencesVerified email at hs-coburg.de
Roland KellerUniversität TübingenVerified email at uni-tuebingen.de

Nicolas Rodriguez

Senior Software Systems and Database Architect, Babraham Institute

Verified email at babraham.ac.uk - Homepage

System Biology SBML SBFC Converter Java


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BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ... BMC systems biology 4 (1), 92, 2010	656	2010
Database BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ...	656*	2010
BioModels: ten-year anniversary V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ... Nucleic acids research 43 (D1), D542-D548, 2015	309	2015
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011	309	2011
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ... BMC systems biology 7 (1), 135, 2013	174	2013
Path2Models: large-scale generation of computational models from biochemical pathway maps F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ... BMC systems biology 7 (1), 116, 2013	162	2013
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 369, 2014	132	2014
JSBML: a flexible Java library for working with SBML A Dräger, N Rodriguez, M Dumousseau, A Dörr, C Wrzodek, N Le Novère, ... Bioinformatics 27 (15), 2167-2168, 2011	113	2011
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees S Whelan, PIW de Bakker, E Quevillon, N Rodriguez, N Goldman Nucleic Acids Research 34 (suppl 1), D327-D331, 2006	83	2006
BioModels: Content, Features, Functionality, and Use N Juty, R Ali, M Glont, S Keating, N Rodriguez, MJ Swat, SM Wimalaratne, ... CPT: Pharmacometrics & Systems Pharmacology 4 (2), 1-14, 2015	81	2015
Designing and encoding models for synthetic biology L Endler, N Rodriguez, N Juty, V Chelliah, C Laibe, C Li, N Le Novère Journal of The Royal Society Interface 6 (Suppl 4), S405-S417, 2009	79	2009
BioModels: expanding horizons to include more modelling approaches and formats M Glont, TVN Nguyen, M Graesslin, R Hälke, R Ali, J Schramm, ... Nucleic acids research 46 (D1), D1248-D1253, 2017	76	2017
SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML) N Rodriguez, M Donizelli, N Le Novère BMC bioinformatics 8 (1), 79, 2007	44	2007
JSBML 1.0: providing a smorgasbord of options to encode systems biology models N Rodriguez, A Thomas, L Watanabe, IY Vazirabad, V Kofia, HF Gómez, ... Bioinformatics 31 (20), 3383-3386, 2015	43	2015
Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging J Hastings, A Mains, B Virk, N Rodriguez, S Murdoch, J Pearce, ... Frontiers in molecular biosciences 6, 2, 2019	42	2019
The systems biology simulation core algorithm R Keller, A Dörr, A Tabira, A Funahashi, MJ Ziller, R Adams, N Rodriguez, ... BMC systems biology 7 (1), 55, 2013	42	2013
MELTING, a flexible platform to predict the melting temperatures of nucleic acids M Dumousseau, N Rodriguez, N Juty, N Le Novere BMC bioinformatics 13 (1), 101, 2012	38	2012
Modeling meets metabolomics–the wormjam consensus model as basis for metabolic studies in the model organism Caenorhabditis elegans MA Witting, J Hastings, N Rodriguez, C Joshi, J Hattwell, P Ebert, ... Frontiers in Molecular Biosciences 5, 96, 2018	31	2018
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE) D Waltemath, FT Bergmann, C Chaouiya, T Czauderna, P Gleeson, ... Standards in Genomic Sciences 9 (3), 1285-1301, 2014	30	2014
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE) D Waltemath, FT Bergmann, C Chaouiya, T Czauderna, P Gleeson, ... Standards in genomic sciences 9 (3), 1285, 2014	30	2014

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