| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1652* | 2020 |
| Metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data F Jühling, H Kretzmer, SH Bernhart, C Otto, PF Stadler, S Hoffmann Genome research 26 (2), 256-262, 2016 | 299 | 2016 |
| Molecular recording of mammalian embryogenesis MM Chan, ZD Smith, S Grosswendt, H Kretzmer, TM Norman, B Adamson, ... Nature 570 (7759), 77-82, 2019 | 291 | 2019 |
| Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites JV Veenvliet, A Bolondi, H Kretzmer, L Haut, M Scholze-Wittler, D Schifferl, ... Science 370 (6522), eaba4937, 2020 | 218 | 2020 |
| DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ... Nature genetics 47 (11), 1316-1325, 2015 | 143 | 2015 |
| Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing P Giesselmann, B Brändl, E Raimondeau, R Bowen, C Rohrandt, ... Nature biotechnology 37 (12), 1478-1481, 2019 | 140 | 2019 |
| Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer SH Bernhart, H Kretzmer, LM Holdt, F Jühling, O Ammerpohl, ... Scientific reports 6 (1), 37393, 2016 | 116 | 2016 |
| Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma C López, K Kleinheinz, SM Aukema, M Rohde, SH Bernhart, ... Nature communications 10 (1), 1459, 2019 | 115 | 2019 |
| MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells G Doose, A Haake, SH Bernhart, C López, S Duggimpudi, F Wojciech, ... Proceedings of the National Academy of Sciences 112 (38), E5261-E5270, 2015 | 105 | 2015 |
| Dnmt1 has de novo activity targeted to transposable elements C Haggerty, H Kretzmer, C Riemenschneider, AS Kumar, AL Mattei, ... Nature structural & molecular biology 28 (7), 594-603, 2021 | 102 | 2021 |
| Epigenetic regulator function through mouse gastrulation S Grosswendt, H Kretzmer, ZD Smith, AS Kumar, S Hetzel, L Wittler, ... Nature 584 (7819), 102-108, 2020 | 99 | 2020 |
| Molecular map of chronic lymphocytic leukemia and its impact on outcome BA Knisbacher, Z Lin, CK Hahn, F Nadeu, M Duran-Ferrer, KE Stevenson, ... Nature genetics 54 (11), 1664-1674, 2022 | 68 | 2022 |
| Sex differences in oncogenic mutational processes CH Li, SD Prokopec, RX Sun, F Yousif, N Schmitz, PC Boutros Nature communications 11 (1), 4330, 2020 | 65 | 2020 |
| Self-patterning of human stem cells into post-implantation lineages M Pedroza, SI Gassaloglu, N Dias, L Zhong, TCJ Hou, H Kretzmer, ... Nature 622 (7983), 574-583, 2023 | 54 | 2023 |
| Alterations of microRNA and microRNA-regulated messenger RNA expression in germinal center B-cell lymphomas determined by integrative sequencing analysis K Hezaveh, A Kloetgen, SH Bernhart, KD Mahapatra, D Lenze, J Richter, ... Haematologica 101 (11), 1380, 2016 | 53 | 2016 |
| Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas D Hübschmann, K Kleinheinz, R Wagener, SH Bernhart, C López, ... Leukemia 35 (7), 2002-2016, 2021 | 49 | 2021 |
| Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ... Nature communications 11 (1), 4748, 2020 | 38 | 2020 |
| Hijacking of transcriptional condensates by endogenous retroviruses V Asimi, A Sampath Kumar, H Niskanen, C Riemenschneider, S Hetzel, ... Nature Genetics 54 (8), 1238-1247, 2022 | 35 | 2022 |
| Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages D Andergassen, ZD Smith, H Kretzmer, JL Rinn, A Meissner Developmental cell 56 (21), 2995-3005. e4, 2021 | 32 | 2021 |
| Dissecting the DNA binding landscape and gene regulatory network of p63 and p53 K Riege, H Kretzmer, A Sahm, SS McDade, S Hoffmann, M Fischer Elife 9, e63266, 2020 | 28 | 2020 |
