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Elizabeth Allman
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Year
Identifiability of parameters in latent structure models with many observed variables
ES Allman, C Matias, JA Rhodes
6632009
Mathematical models in biology: an introduction
ES Allman, JA Rhodes
Cambridge University Press, 2004
3832004
Phylogenetic ideals and varieties for the general Markov model
ES Allman, JA Rhodes
Advances in Applied Mathematics 40 (2), 127-148, 2008
1922008
Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
ES Allman, JH Degnan, JA Rhodes
Journal of mathematical biology 62, 833-862, 2011
1662011
Phylogenetic invariants for the general Markov model of sequence mutation
ES Allman, JA Rhodes
Mathematical biosciences 186 (2), 113-144, 2003
1422003
The identifiability of tree topology for phylogenetic models, including covarion and mixture models
ES Allman, JA Rhodes
Journal of Computational Biology 13 (5), 1101-1113, 2006
922006
Identifiability of a Markovian model of molecular evolution with gamma-distributed rates
ES Allman, C Ané, JA Rhodes
Advances in Applied Probability 40 (1), 229-249, 2008
752008
NANUQ: a method for inferring species networks from gene trees under the coalescent model
ES Allman, H Baños, JA Rhodes
Algorithms for Molecular Biology 14, 1-25, 2019
712019
Parameter identifiability in a class of random graph mixture models
ES Allman, C Matias, JA Rhodes
Journal of Statistical Planning and Inference 141 (5), 1719-1736, 2011
592011
Identifiability of two-tree mixtures for group-based models
ES Allman, S Petrović, JA Rhodes, S Sullivant
IEEE/ACM transactions on computational biology and bioinformatics 8 (3), 710-722, 2010
572010
Phylogenetic invariants
ES Allman, JA Rhodes
Reconstructing evolution: new mathematical and computational advances, 108-146, 2007
562007
Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites
ES Allman, JA Rhodes
Mathematical Biosciences 211 (1), 18-33, 2008
522008
Tensors of nonnegative rank two
ES Allman, JA Rhodes, B Sturmfels, P Zwiernik
Linear algebra and its applications 473, 37-53, 2015
482015
Species tree inference from gene splits by unrooted STAR methods
ES Allman, JH Degnan, JA Rhodes
IEEE/ACM transactions on computational biology and bioinformatics 15 (1 …, 2016
432016
MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R
JA Rhodes, H Baños, JD Mitchell, ES Allman
Bioinformatics 37 (12), 1766-1768, 2021
392021
A semialgebraic description of the general Markov model on phylogenetic trees
ES Allman, JA Rhodes, A Taylor
SIAM Journal on Discrete Mathematics 28 (2), 736-755, 2014
362014
Split scores: a tool to quantify phylogenetic signal in genome-scale data
ES Allman, LS Kubatko, JA Rhodes
Systematic Biology 66 (4), 620-636, 2017
352017
The identifiability of covarion models in phylogenetics
ES Allman, JA Rhodes
IEEE/ACM transactions on computational biology and bioinformatics 6 (1), 76-88, 2008
342008
Determining species tree topologies from clade probabilities under the coalescent
ES Allman, JH Degnan, JA Rhodes
Journal of theoretical biology 289, 96-106, 2011
332011
Quartets and parameter recovery for the general Markov model of sequence mutation
ES Allman, JA Rhodes
Applied Mathematics Research Express 2004 (4), 107-131, 2004
332004
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