| NetMHCpan-4.0: improved peptide–MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data V Jurtz, S Paul, M Andreatta, P Marcatili, B Peters, M Nielsen The Journal of Immunology 199 (9), 3360-3368, 2017 | 1004 | 2017 |
| BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes MC Jespersen, B Peters, M Nielsen, P Marcatili Nucleic acids research 45 (W1), W24-W29, 2017 | 985 | 2017 |
| Improved methods for predicting peptide binding affinity to MHC class II molecules KK Jensen, M Andreatta, P Marcatili, S Buus, JA Greenbaum, Z Yan, ... Immunology 154 (3), 394-406, 2018 | 567 | 2018 |
| NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning MS Klausen, MC Jespersen, H Nielsen, KK Jensen, VI Jurtz, ... Proteins: Structure, Function, and Bioinformatics 87 (6), 520-527, 2019 | 418 | 2019 |
| IEDB-AR: immune epitope database—analysis resource in 2019 SK Dhanda, S Mahajan, S Paul, Z Yan, H Kim, MC Jespersen, V Jurtz, ... Nucleic acids research 47 (W1), W502-W506, 2019 | 216 | 2019 |
| PIGS: automatic prediction of antibody structures P Marcatili, A Rosi, A Tramontano Bioinformatics 24 (17), 1953-1954, 2008 | 188 | 2008 |
| On the mechanism of chloroquine resistance in Plasmodium falciparum M Chinappi, A Via, P Marcatili, A Tramontano PloS one 5 (11), e14064, 2010 | 111 | 2010 |
| DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks J Hallgren, KD Tsirigos, MD Pedersen, JJ Almagro Armenteros, ... BioRxiv, 2022.04. 08.487609, 2022 | 102 | 2022 |
| Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma S Zibellini, D Capello, F Forconi, P Marcatili, D Rossi, S Rattotti, ... haematologica, haematol. 2010.025437 v1, 2010 | 101 | 2010 |
| Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server PP Olimpieri, A Chailyan, A Tramontano, P Marcatili Bioinformatics 29 (18), 2285-2291, 2013 | 94 | 2013 |
| Antibody specific B-cell epitope predictions: leveraging information from antibody-antigen protein complexes MC Jespersen, S Mahajan, B Peters, M Nielsen, P Marcatili Frontiers in immunology 10, 298, 2019 | 84 | 2019 |
| The association of heavy and light chain variable domains in antibodies: implications for antigen specificity A Chailyan, P Marcatili, A Tramontano FEBS Journal, 2011 | 83 | 2011 |
| T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide–MHC complexes AK Bentzen, L Such, KK Jensen, AM Marquard, LE Jessen, NJ Miller, ... Nature biotechnology 36 (12), 1191-1196, 2018 | 80 | 2018 |
| Antibody informatics for drug discovery H Shirai, C Prades, R Vita, P Marcatili, B Popovic, J Xu, JP Overington, ... Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (11), 2002-2015, 2014 | 77 | 2014 |
| NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks VI Jurtz, LE Jessen, AK Bentzen, MC Jespersen, S Mahajan, R Vita, ... BioRxiv, 433706, 2018 | 70 | 2018 |
| The ABCD database: a repository for chemically defined antibodies WC Lima, E Gasteiger, P Marcatili, P Duek, A Bairoch, P Cosson Nucleic acids research 48 (D1), D261-D264, 2020 | 67 | 2020 |
| Effects of natural selection and gene conversion on the evolution of human glycophorins coding for MNS blood polymorphisms in malaria-endemic African populations WY Ko, KA Kaercher, E Giombini, P Marcatili, A Froment, M Ibrahim, ... The American Journal of Human Genetics 88 (6), 741-754, 2011 | 61 | 2011 |
| LYRA, a webserver for lymphocyte receptor structural modeling MS Klausen, MV Anderson, MC Jespersen, M Nielsen, P Marcatili Nucleic Acids Research 43 (W1), W349-W355, 2015 | 57 | 2015 |
| Identification of new autoantigens by protein array indicates a role for IL4 neutralization in Autoimmune Hepatitis C Zingaretti, A Cardaci, M Moro, M Crosti, A Sinisi, E Sugliano, C Cheroni, ... Molecular & Cellular Proteomics, 2012 | 51 | 2012 |
| A database of immunoglobulins with integrated tools: DIGIT A Chailyan, A Tramontano, P Marcatili Nucleic Acids Research 40 (D1), D1230-D1234, 2012 | 48 | 2012 |
Morten NielsenDepartment of Health Technology, The Technical University ofVerified email at cbs.dtu.dk
