|Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software|
L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ...
Bioinformatics 27 (8), 1179-1180, 2011
|Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes|
MA Bray, S Singh, H Han, CT Davis, B Borgeson, C Hartland, ...
Nature protocols 11 (9), 1757-1774, 2016
|Sarcomere alignment is regulated by myocyte shape|
MA Bray, SP Sheehy, KK Parker
Cell motility and the cytoskeleton 65 (8), 641-651, 2008
|Identification of Host-Targeted Small Molecules That Restrict Intracellular Mycobacterium tuberculosis Growth|
SA Stanley, AK Barczak, MR Silvis, SS Luo, K Sogi, M Vokes, MA Bray, ...
PLoS pathogens 10 (2), e1003946, 2014
|Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice|
M Elkabets, AM Gifford, C Scheel, B Nilsson, F Reinhardt, MA Bray, ...
The Journal of clinical investigation 121 (2), 784-799, 2011
|Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling|
MJ Wawer, K Li, SM Gustafsdottir, V Ljosa, NE Bodycombe, MA Marton, ...
Proceedings of the National Academy of Sciences 111 (30), 10911-10916, 2014
|Rare variants in PPARG with decreased activity in adipocyte differentiation are associated with increased risk of type 2 diabetes|
AR Majithia, J Flannick, P Shahinian, M Guo, MA Bray, P Fontanillas, ...
Proceedings of the National Academy of Sciences 111 (36), 13127-13132, 2014
|Experimental and theoretical analysis of phase singularity dynamics in cardiac tissue|
MA BRAY, SF LIN, RR Aliev, BJ Roth, JP Wikswo Jr
Journal of cardiovascular electrophysiology 12 (6), 716-722, 2001
|ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state|
Y Chudnovsky, D Kim, S Zheng, WA Whyte, M Bansal, MA Bray, S Gopal, ...
Cell reports 6 (2), 313-324, 2014
|Identification of regulators of polyploidization presents therapeutic targets for treatment of AMKL|
Q Wen, B Goldenson, SJ Silver, M Schenone, V Dancik, Z Huang, ...
Cell 150 (3), 575-589, 2012
|Increased expression of the immune modulatory molecule PD-L1 (CD274) in anaplastic meningioma|
Z Du, M Abedalthagafi, AA Aizer, AR McHenry, HH Sun, MA Bray, ...
Oncotarget 6 (7), 4704, 2015
|Myocyte shape regulates lateral registry of sarcomeres and contractility|
PL Kuo, H Lee, MA Bray, NA Geisse, YT Huang, WJ Adams, SP Sheehy, ...
The American journal of pathology 181 (6), 2030-2037, 2012
|Self-organization of muscle cell structure and function|
A Grosberg, PL Kuo, CL Guo, NA Geisse, MA Bray, WJ Adams, ...
PLoS computational biology 7 (2), e1001088, 2011
|Considerations in phase plane analysis for nonstationary reentrant cardiac behavior|
MA Bray, JP Wikswo
Physical Review E 65 (5), 051902, 2002
|Workflow and metrics for image quality control in large-scale high-content screens|
MA Bray, AN Fraser, TP Hasaka, AE Carpenter
Journal of biomolecular screening 17 (2), 266-274, 2012
|Nuclear morphology and deformation in engineered cardiac myocytes and tissues|
MAP Bray, WJ Adams, NA Geisse, AW Feinberg, SP Sheehy, KK Parker
Biomaterials 31 (19), 5143-5150, 2010
|A dataset of images and morphological profiles of 30 000 small-molecule treatments using the Cell Painting assay|
MA Bray, SM Gustafsdottir, MH Rohban, S Singh, V Ljosa, KL Sokolnicki, ...
Gigascience 6 (12), giw014, 2017
|Visualization of parameter space for image analysis|
AJ Pretorius, MA Bray, AE Carpenter, RA Ruddle
IEEE Transactions on Visualization and Computer Graphics 17 (12), 2402-2411, 2011
|Use of topological charge to determine filament location and dynamics in a numerical model of scroll wave activity|
MA Bray, JP Wikswo
IEEE transactions on biomedical engineering 49 (10), 1086-1093, 2002
|Pipeline for illumination correction of images for high‐throughput microscopy|
S Singh, MA Bray, TR Jones, AE Carpenter
Journal of microscopy 256 (3), 231-236, 2014