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Dmitry Penzar
Dmitry Penzar
Vavilov Institute of General Genetics, FBB Lomonosov MSU
Verified email at kodomo.fbb.msu.ru
Title
Cited by
Cited by
Year
The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
Nature microbiology 5 (4), 536-544, 2020
8244*2020
H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 histone tags suggest distinct regulatory evolution of open and condensed chromatin landmarks
AA Igolkina, A Zinkevich, KO Karandasheva, AA Popov, MV Selifanova, ...
Cells 8 (9), 1034, 2019
742019
Landscape of allele-specific transcription factor binding in the human genome
S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ...
Nature communications 12 (1), 2751, 2021
652021
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
PB Giovanna Ambrosini, Ilya Vorontsov, Dmitry Penzar, Romain Groux, Oriol ...
Genome Biology 21, 2020
452020
Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay
D Shigaki, O Adato, AN Adhikari, S Dong, A Hawkins‐Hooker, F Inoue, ...
Human mutation 40 (9), 1280-1291, 2019
442019
Profiling of human molecular pathways affected by retrotransposons at the level of regulation by transcription factor proteins
D Nikitin, D Penzar, A Garazha, M Sorokin, V Tkachev, N Borisov, ...
Frontiers in Immunology 9, 322745, 2018
282018
Retroelement—linked transcription factor binding patterns point to quickly developing molecular pathways in human evolution
D Nikitin, A Garazha, M Sorokin, D Penzar, V Tkachev, A Markov, ...
Cells 8 (2), 130, 2019
122019
LegNet: a best-in-class deep learning model for short DNA regulatory regions
IVK Dmitry Penzar, Daria Nogina, Elizaveta Noskova, Arsenii Zinkevich ...
Bioinformatics 39 (8), 2023
82023
Investigation of the role of PUFA metabolism in breast cancer using a rank-based random forest algorithm
MV Guryleva, DD Penzar, DV Chistyakov, AA Mironov, AV Favorov, ...
Cancers 14 (19), 4663, 2022
32022
What do neighbors tell about you: the local context of cis-regulatory modules complicates prediction of regulatory variants
DD Penzar, AO Zinkevich, IE Vorontsov, VV Sitnik, AV Favorov, ...
Frontiers in genetics 10, 485085, 2019
32019
Evaluation and optimization of sequence-based gene regulatory deep learning models
AM Rafi, D Nogina, D Penzar, D Lee, D Lee, N Kim, S Kim, D Kim, Y Shin, ...
bioRxiv, 2023
22023
PQ, a new program for phylogeny reconstruction
D Penzar, M Krivozubov, S Spirin
BMC bioinformatics 19, 1-14, 2018
22018
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
N Null, S Jain, C Bakolitsa, SE Brenner, P Radivojac, J Moult, S Repo, ...
Genome Biology 25 (1), 1-46, 2024
12024
Ribonanza: deep learning of RNA structure through dual crowdsourcing
S He, R Huang, J Townley, RC Kretsch, TG Karagianes, DBT Cox, H Blair, ...
bioRxiv, 2024.02. 24.581671, 2024
2024
PhyloBench: a Benchmark for Evaluating Phylogenetic Programs
S Spirin, A Sigorskikh, A Efremov, D Penzar, A Karyagina
2023
LegNet: a novel approach to modeling regulatory sequences with deep convolutional networks
MCCMB'2023
https://mccmb.belozersky.msu.ru/2023/thesis/MCCMB.utf8.html, 2023
2023
NogiNet: repurposing EfficientNetV2 for accurate promoter sequence-to-expression modeling
D Penzar
https://www.iscb.org/rsgdream2022-schedule/programme/dream-challenges, 2022
2022
Investigation of the Role of PUFA Metabolism in Breast Cancer Using a Rank-Based Random Forest Algorithm. Cancers 2022, 14, 4663
MV Guryleva, DD Penzar, DV Chistyakov, AA Mironov, AV Favorov, ...
s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2022
2022
PhyloBench, a benchmark for evaluation of phylogenetic programs
A Sigorskih, A Efremov, D Penzar, A Karyagina, S Spirin
Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB …, 2022
2022
PREDICTION OF REGULATORY SEQUENCE VARIANTS USING DATA FROM MULTIPLE PARALLEL REPORTER ASSAYS
DD Penzar, AO Zinkevich, IE Vorontsov, VV Sitnik, AV Favorov, ...
VII Съезд Вавиловского общества генетиков и селекционеров, посвященный 100 …, 2019
2019
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