| Recovering gene interactions from single-cell data using data diffusion D Van Dijk, R Sharma, J Nainys, K Yim, P Kathail, AJ Carr, C Burdziak, ... Cell 174 (3), 716-729. e27, 2018 | 1522 | 2018 |
| Wishbone identifies bifurcating developmental trajectories from single-cell data M Setty, MD Tadmor, S Reich-Zeliger, O Angel, TM Salame, P Kathail, ... Nature biotechnology 34 (6), 637-645, 2016 | 652 | 2016 |
| MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data D Dijk, J Nainys, R Sharma, P Kaithail, AJ Carr, KR Moon, L Mazutis, ... BioRxiv, 111591, 2017 | 183 | 2017 |
| Personal transcriptome variation is poorly explained by current genomic deep learning models C Huang, RW Shuai, P Baokar, R Chung, R Rastogi, P Kathail, ... Nature Genetics 55 (12), 2056-2059, 2023 | 45 | 2023 |
| Characterizing uncertainty in predictions of genomic sequence-to-activity models A Bajwa, R Rastogi, P Kathail, RW Shuai, N Ioannidis Machine Learning in Computational Biology, 279-297, 2024 | 4 | 2024 |
| Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function GB Loeb, P Kathail, RW Shuai, R Chung, RJ Grona, S Peddada, V Sevim, ... Nature Genetics 56 (10), 2078-2092, 2024 | 3 | 2024 |
| Current genomic deep learning models display decreased performance in cell type-specific accessible regions P Kathail, RW Shuai, R Chung, CJ Ye, GB Loeb, NM Ioannidis Genome Biology 25 (1), 202, 2024 | 2 | 2024 |
| Population Diversity at the Single-Cell Level MG Gordon, P Kathail, B Choy, MC Kim, T Mazumder, M Gearing, CJ Ye Annual Review of Genomics and Human Genetics 25, 2024 | 1 | 2024 |
| Reference-free multiplexed single-cell sequencing identifies genetic modifiers of the human immune response GC Hartoularos, Y Si, F Zhang, P Kathail, DS Lee, A Ogorodnikov, Y Sun, ... bioRxiv, 2023.05. 29.542756, 2023 | 1 | 2023 |
| Leveraging genomic deep learning models for non-coding variant effect prediction P Kathail, A Bajwa, NM Ioannidis arXiv preprint arXiv:2411.11158, 2024 | | 2024 |
| Genetic variants associated with cell-type-specific intra-individual gene expression variability reveal new mechanisms of genome regulation A Xue, J Alquicira-Hernández, ASE Cuomo, A Senabouth, G Gordon, ... | | 2024 |
| Genetic variants associated with cell-type-specific intra-individual gene expression variability reveal new mechanisms of genome regulation JE Powell, A Xue, S Yazar, J Alquicira, A Cuomo, A Senabouth, G Gordon, ... bioRxiv, 2024.05. 05.592598, 2024 | | 2024 |
| Identification of Kidney Cell-Type-Specific Regulatory Elements Reveals Genetic Variants, Genes, and Cell Types Influencing Kidney Function Heritability: FR-PO305 G Loeb, P Kathail, RW Shuai, KK Cheung, RK Chung, N Ioannidis, ... Journal of the American Society of Nephrology 33 (11S), 408, 2022 | | 2022 |
| Assessing the utility of genomic deep learning models for disease-relevant variant effect prediction P Kathail, R Shuai, R Chung, CJ Ye, G Loeb, NM Ioannidis International Conference on Machine Learning (ICML) Workshop on …, 2022 | | 2022 |
