Brian D. Weitzner
Brian D. Weitzner
Lyell Immunopharma
Verified email at lyell.com - Homepage
Title
Cited by
Cited by
Year
Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)
S Lyskov, FC Chou, SÓ Conchúir, BS Der, K Drew, D Kuroda, J Xu, ...
PloS one 8 (5), e63906, 2013
2332013
Benchmarking and analysis of protein docking performance in Rosetta v3. 2
S Chaudhury, M Berrondo, BD Weitzner, P Muthu, H Bergman, JJ Gray
PloS one 6 (8), e22477, 2011
2042011
Modeling and docking of antibody structures with Rosetta
BD Weitzner, JR Jeliazkov, S Lyskov, N Marze, D Kuroda, R Frick, ...
Nature protocols 12 (2), 401, 2017
1152017
De novo design of potent and selective mimics of IL-2 and IL-15
DA Silva, S Yu, UY Ulge, JB Spangler, KM Jude, C Labão-Almeida, LR Ali, ...
Nature 565 (7738), 186-191, 2019
1082019
An integrated framework advancing membrane protein modeling and design
RF Alford, JK Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ...
PLoS Comput Biol 11 (9), e1004398, 2015
952015
Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization
BD Weitzner, D Kuroda, N Marze, J Xu, JJ Gray
Proteins: Structure, Function, and Bioinformatics 82 (8), 1611-1623, 2014
722014
The origin of CDR H3 structural diversity
BD Weitzner, RL Dunbrack Jr, JJ Gray
Structure 23 (2), 302-311, 2015
552015
Real-time PyMOL visualization for Rosetta and PyRosetta
EH Baugh, S Lyskov, BD Weitzner, JJ Gray
PloS one 6 (8), e21931, 2011
512011
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
J Adolf-Bryfogle, O Kalyuzhniy, M Kubitz, BD Weitzner, X Hu, Y Adachi, ...
PLoS computational biology 14 (4), e1006112, 2018
352018
Accurate structure prediction of CDR H3 loops enabled by a novel structure-based C-terminal constraint
BD Weitzner, JJ Gray
The Journal of Immunology 198 (1), 505-515, 2017
242017
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature Methods, 1-14, 2020
19*2020
An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases
B Weitzner, T Meehan, Q Xu, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 75 (2), 289-295, 2009
172009
A framework to simplify combined sampling strategies in Rosetta
JR Porter, BD Weitzner, OF Lange
PLOS one 10 (9), e0138220, 2015
142015
A computational method for design of connected catalytic networks in proteins
BD Weitzner, Y Kipnis, AG Daniel, D Hilvert, D Baker
Protein Science 28 (12), 2036-2041, 2019
82019
Will widgets and semantic tagging change computational biology?
PE Bourne, B Beran, C Bi, W Bluhm, R Dunbrack, A Prlić, G Quinn, ...
PLoS Comput Biol 6 (2), e1000673, 2010
62010
Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation
AS Ford, BD Weitzner, CD Bahl
Protein Science 29 (1), 43-51, 2020
52020
Designing peptides on a quantum computer
VK Mulligan, H Melo, HI Merritt, S Slocum, BD Weitzner, AM Watkins, ...
bioRxiv, 752485, 2020
52020
Better together: Elements of successful scientific software development in a distributed collaborative community
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...
PLoS computational biology 16 (5), e1007507, 2020
22020
PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design
K Le, J Adolf-Bryfogle, J Klima, S Lyskov, J Labonte, S Bertolani, ...
Preprints, 2020
12020
I am a United Academic Worker
BD Weitzner
Science 358 (6360), 266-266, 2017
12017
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Articles 1–20