Hugo B. Brandão
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Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
IM Flyamer*, J Gassler*, M Imakaev*, HB Brandão, SV Ulianov, ...
Nature 544 (7648), 110-114, 2017
Extensive heterogeneity and intrinsic variation in spatial genome organization
EH Finn, G Pegoraro, HB Brandão, AL Valton, ME Oomen, J Dekker, ...
Cell 176 (6), 1502-1515. e10, 2019
A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture
J Gassler*, HB Brandão*, M Imakaev, IM Flyamer, S Ladstätter, ...
The EMBO journal 36 (24), 3600-3618, 2017
Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus
X Wang, HB Brandão, TBK Le, MT Laub, DZ Rudner
Science 355 (6324), 524-527, 2017
Dynamics of CTCF and cohesin mediated chromatin looping revealed by live-cell imaging
M Gabriele*, HB Brandão*, S Grosse-Holz*, A Jha, GM Dailey, C Cattoglio, ...
Science 376 (6592), 496-501, 2022
Chromosome organization by one-sided and two-sided loop extrusion
EJ Banigan*, AA van den Berg*, HB Brandão*, JF Marko, LA Mirny, ...
Elife 9, e53558, 2020
RNA polymerases as moving barriers to condensin loop extrusion
HB Brandão, P Paul, AA van den Berg, DZ Rudner, X Wang, LA Mirny
Proceedings of the National Academy of Sciences 116 (41), 20489-20499, 2019
In vivo evidence for ATPase-dependent DNA translocation by the Bacillus subtilis SMC condensin complex
X Wang, AC Hughes, HB Brandão, B Walker, C Lierz, JC Cochran, ...
Molecular cell 71 (5), 841-847. e5, 2018
MCM complexes are barriers that restrict cohesin-mediated loop extrusion
BJH Dequeker, MJ Scherr, HB Brandão, J Gassler, S Powell, I Gaspar, ...
Nature 606 (7912), 197-203, 2022
DNA-loop-extruding SMC complexes can traverse one another in vivo
HB Brandão, Z Ren, X Karaboja, LA Mirny, X Wang
Nature structural & molecular biology 28 (8), 642-651, 2021
Transcription shapes 3D chromatin organization by interacting with loop extrusion
EJ Banigan, W Tang, AA van den Berg, RR Stocsits, G Wutz, HB Brandão, ...
Proceedings of the National Academy of Sciences 120 (11), e2210480120, 2023
Tracking and interpreting long-range chromatin interactions with super-resolution live-cell imaging
HB Brandão*, M Gabriele*, AS Hansen, *equal contributions
Current Opinion in Cell Biology 70, 18-26, 2021
Cortical polarity of the RING protein PAR-2 is maintained by exchange rate kinetics at the cortical-cytoplasmic boundary
Y Arata, M Hiroshima, CG Pack, R Ramanujam, F Motegi, K Nakazato, ...
Cell reports 16 (8), 2156-2168, 2016
XerD unloads bacterial SMC complexes at the replication terminus
X Karaboja, Z Ren, HB Brandão, P Paul, DZ Rudner, X Wang
Molecular Cell 81 (4), 756-766. e8, 2021
mirnylab/pairtools: v0. 2.0
A Goloborodko, N Abdennur, S Venev, H Brandao, G Fudenberg
Zenodo, 2018
Measuring ligand–receptor binding kinetics and dynamics using k-space image correlation spectroscopy
HB Brandao, H Sangji, E Pandžić, S Bechstedt, GJ Brouhard, ...
Methods 66 (2), 273-282, 2014
Diffusion resonance of nanoconfined polymers
AR Klotz, HB Brandao, WW Reisner
Macromolecules 45 (4), 2122-2127, 2012
A high-throughput image correlation method for rapid analysis of fluorophore photoblinking and photobleaching rates
S Sehayek, Y Gidi, V Glembockyte, HB Brandão, P François, G Cosa, ...
ACS Nano 13 (10), 11955-11966, 2019
Fractal polymer with loops recapitulates key features of chromosome organization
K Polovnikov, S Belan, M Imakaev, HB Brandão, LA Mirny
bioRxiv, 2022.02. 01.478588, 2022
DNA double-strand break end synapsis by DNA loop extrusion
JH Yang, HB Brandão*, AS Hansen*, (*co-corresponding authors)
Nature Communications 14 (1913), 1-14, 2023
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Articles 1–20