Hervé Ménager
Hervé Ménager
Verified email at pasteur.fr - Homepage
Cited by
Cited by
Mobyle: a new full web bioinformatics framework
B Néron, H Ménager, C Maufrais, N Joly, J Maupetit, S Letort, S Carrere, ...
Bioinformatics 25 (22), 3005-3011, 2009
Common workflow language, v1. 0
P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
Figshare, 2016
MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
SS Abby, B Néron, H Ménager, M Touchon, EPC Rocha
PLOS ONE 9 (10), e110726, 2014
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
S Cohen-Boulakia, K Belhajjame, O Collin, J Chopard, C Froidevaux, ...
Future Generation Computer Systems 75, 284-298, 2017
BioShaDock: a community driven bioinformatics shared Docker-based tools registry
F Moreews, O Sallou, H Ménager, Y Le Bras, C Monjeaud, C Blanchet, ...
F1000Research, 2015
Semantic map of services for structural bioinformatics
P Tufféry, Z Lacroix, H Ménager
18th International Conference on Scientific and Statistical Database …, 2006
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ...
F1000Research 7, 2018
A public Galaxy platform at Pasteur used as an execution engine for web services
F Mareuil, O Doppelt-Azeroual, H Ménager
F1000Research 6, 2017
On-target activity predictions enable improved CRISPR–dCas9 screens in bacteria
A Calvo-Villamańán, JW Ng, R Planel, H Ménager, A Chen, L Cui, ...
Nucleic acids research 48 (11), e64-e64, 2020
The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis
C Addi, A Presle, S Frémont, F Cuvelier, M Rocancourt, F Milin, ...
Nature communications 11 (1), 1-15, 2020
The bio. tools registry of software tools and data resources for the life sciences
J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kalaš, ...
Genome biology 20 (1), 1-4, 2019
Community curation of bioinformatics software and data resources
J Ison, H Ménager, B Brancotte, E Jaaniso, A Salumets, T Raček, ...
Briefings in bioinformatics 21 (5), 1697-1705, 2020
ReGaTE: registration of galaxy tools in elixir
O Doppelt-Azeroual, F Mareuil, E Deveaud, M Kalaš, N Soranzo, ...
GigaScience 6 (6), gix022, 2017
Using registries to integrate bioinformatics tools and services into workbench environments
H Ménager, M Kalaš, K Rapacki, J Ison
International Journal on Software Tools for Technology Transfer 18 (6), 581-586, 2016
Bioinformatics services discovery using ontology classification
H Ménager, Z Lacroix, P Tufféry
2007 IEEE Congress on Services (Services 2007), 106-113, 2007
SemanticBio: Building conceptual scientific workflows over web services
Z Lacroix, H Ménager
International Workshop on Data Integration in the Life Sciences, 296-299, 2005
A workflow engine for the execution of scientific protocols
H Ménager, Z Lacroix
22nd International Conference on Data Engineering Workshops (ICDEW'06), 68-68, 2006
Using bio. tools to generate and annotate workbench tool descriptions
KH Hillion, I Kuzmin, A Khodak, E Rasche, M Crusoe, H Peterson, J Ison, ...
F1000Research 6, 2017
Semantic Map for Structural Bioinformatics: enhanced service discovery based on high level concept ontology
E Strauser, M Naveau, H Ménager, J Maupetit, Z Lacroix, P Tufféry
International Workshop on Resource Discovery, 57-70, 2010
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