Aleksandra A Kolodziejczyk
Aleksandra A Kolodziejczyk
Verified email at weizmann.ac.il
Title
Cited by
Cited by
Year
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093-1095, 2013
7672013
The technology and biology of single-cell RNA sequencing
AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni, SA Teichmann
Molecular cell 58 (4), 610-620, 2015
7352015
Dysbiosis and the immune system
M Levy, AA Kolodziejczyk, CA Thaiss, E Elinav
Nature Reviews Immunology 17 (4), 219-232, 2017
6532017
Single cell RNA-sequencing of pluripotent states unlocks modular transcriptional variation
AA Kolodziejczyk, JK Kim, JCH Tsang, T Ilicic, J Henriksson, ...
Cell stem cell 17 (4), 471-485, 2015
3802015
Classification of low quality cells from single-cell RNA-seq data
T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ...
Genome biology 17 (1), 1-15, 2016
3472016
Diet–microbiota interactions and personalized nutrition
AA Kolodziejczyk, D Zheng, E Elinav
Nature Reviews Microbiology 17 (12), 742-753, 2019
2152019
Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression
JK Kim, AA Kolodziejczyk, T Ilicic, SA Teichmann, JC Marioni
Nature communications 6 (1), 1-9, 2015
1812015
Aging increases cell-to-cell transcriptional variability upon immune stimulation
CP Martinez-Jimenez, N Eling, HC Chen, CA Vallejos, AA Kolodziejczyk, ...
Science 355 (6332), 1433-1436, 2017
1762017
Bile acids in glucose metabolism in health and disease
H Shapiro, AA Kolodziejczyk, D Halstuch, E Elinav
Journal of Experimental Medicine 215 (2), 383-396, 2018
1672018
The role of the microbiome in NAFLD and NASH
AA Kolodziejczyk, D Zheng, O Shibolet, E Elinav
EMBO molecular medicine 11 (2), e9302, 2019
1652019
Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis
B Mahata, X Zhang, AA Kolodziejczyk, V Proserpio, L Haim-Vilmovsky, ...
Cell reports 7 (4), 1130-1142, 2014
1632014
Establishment of mouse expanded potential stem cells
J Yang, DJ Ryan, W Wang, JCH Tsang, G Lan, H Masaki, X Gao, ...
Nature 550 (7676), 393-397, 2017
1282017
Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells
JCH Tsang, Y Yu, S Burke, F Buettner, C Wang, AA Kolodziejczyk, ...
Genome biology 16 (1), 1-16, 2015
902015
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
G Kar, JK Kim, AA Kolodziejczyk, KN Natarajan, ET Triglia, B Mifsud, ...
Nature communications 8 (1), 1-14, 2017
502017
Acute liver failure is regulated by MYC-and microbiome-dependent programs
AA Kolodziejczyk, S Federici, N Zmora, G Mohapatra, M Dori-Bachash, ...
Nature medicine 26 (12), 1899-1911, 2020
162020
Global and targeted approaches to single-cell transcriptome characterization
AA Kolodziejczyk, T Lönnberg
Briefings in functional genomics 17 (4), 209-219, 2018
162018
Single cell transcriptomics of pluripotent stem cells: reprogramming and differentiation
KN Natarajan, SA Teichmann, AA Kolodziejczyk
Current opinion in genetics & development 46, 66-76, 2017
152017
Cell-type specialization in the brain is encoded by specific long-range chromatin topologies
W Winick-Ng, A Kukalev, I Harabula, LZ Redondo, D Szabo, M Meijer, ...
bioRxiv, 2020.04. 02.020990, 2021
62021
Commensal inter-bacterial interactions shaping the microbiota
L Kern, SK Abdeen, AA Kolodziejczyk, E Elinav
Current Opinion in Microbiology 63, 158-171, 2021
2021
The spatio-temporal program of liver zonal regeneration
S Ben-Moshe, T Veg, R Manco, S Dan, AA Kolodziejczyk, KB Halpern, ...
bioRxiv, 2021
2021
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Articles 1–20