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Qifang Xu
Qifang Xu
Fox Chase Cancer Center
Verified email at fccc.edu - Homepage
Title
Cited by
Cited by
Year
PyIgClassify: a database of antibody CDR structural classifications
J Adolf-Bryfogle, Q Xu, B North, A Lehmann, RL Dunbrack Jr
Nucleic acids research 43 (D1), D432-D438, 2015
1282015
Statistical analysis of interface similarity in crystals of homologous proteins
Q Xu, AA Canutescu, G Wang, M Shapovalov, Z Obradovic, ...
Journal of molecular biology 381 (2), 487-507, 2008
1282008
The protein common interface database (ProtCID)—a comprehensive database of interactions of homologous proteins in multiple crystal forms
Q Xu, RL Dunbrack
Nucleic acids research 39 (suppl_1), D761-D770, 2010
892010
Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB
Q Xu, RL Dunbrack Jr
Bioinformatics 28 (21), 2763-2772, 2012
732012
ProtBuD: a database of biological unit structures of protein families and superfamilies
Q Xu, A Canutescu, Z Obradovic, RL Dunbrack Jr
Bioinformatics 22 (23), 2876-2882, 2006
492006
ProtCID: a data resource for structural information on protein interactions
Q Xu, RL Dunbrack Jr
Nature communications 11 (1), 711, 2020
422020
Identifying three-dimensional structures of autophosphorylation complexes in crystals of protein kinases
Q Xu, KL Malecka, L Fink, EJ Jordan, E Duffy, S Kolander, JR Peterson, ...
Science signaling 8 (405), rs13-rs13, 2015
422015
Assessment of template‐based modeling of protein structure in CASP11
V Modi, Q Xu, S Adhikari, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 84, 200-220, 2016
392016
BRCA2, EGFR, and NTRK mutations in mismatch repair-deficient colorectal cancers with MSH2 or MLH1 mutations
S Deihimi, A Lev, M Slifker, E Shagisultanova, Q Xu, K Jung, ...
Oncotarget 8 (25), 39945, 2017
292017
Prediction of phenotypes of missense mutations in human proteins from biological assemblies
Q Wei, Q Xu, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 81 (2), 199-213, 2013
252013
Principles and characteristics of biological assemblies in experimentally determined protein structures
Q Xu, RL Dunbrack Jr
Current opinion in structural biology 55, 34-49, 2019
242019
An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases
B Weitzner, T Meehan, Q Xu, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 75 (2), 289-295, 2009
222009
BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo-and heterooligomers
MV Shapovalov, Q Wang, Q Xu, M Andrake, RL Dunbrack Jr
PloS one 9 (6), e98309, 2014
212014
PP2A/B55α substrate recruitment as defined by the retinoblastoma-related protein p107
H Fowle, Z Zhao, Q Xu, JS Wasserman, X Wang, M Adeyemi, F Feiser, ...
Elife 10, e63181, 2021
192021
Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4
Q Xu, Q Tang, P Katsonis, O Lichtarge, D Jones, S Bovo, G Babbi, ...
Human mutation 38 (9), 1123-1131, 2017
182017
Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI
M Carraro, G Minervini, M Giollo, Y Bromberg, E Capriotti, R Casadio, ...
Human mutation 38 (9), 1042-1050, 2017
162017
Assessment of predicted enzymatic activity of α‐N‐acetylglucosaminidase variants of unknown significance for CAGI 2016
WT Clark, L Kasak, C Bakolitsa, Z Hu, G Andreoletti, G Babbi, Y Bromberg, ...
Human mutation 40 (9), 1519-1529, 2019
142019
Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency
F Kueppers, MD Andrake, Q Xu, RL Dunbrack, J Kim, CL Sanders
BMC Medical Genetics 20, 1-19, 2019
132019
Biological function derived from predicted structures in CASP11
PJ Huwe, Q Xu, MV Shapovalov, V Modi, MD Andrake, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 84, 370-391, 2016
132016
Improving aerosol retrieval accuracy by integrating AERONET, MISR and MODIS data
Q Xu, Z Obradovic, B Han, Y Li, A Braverman, S Vucetic
2005 7th International Conference on Information Fusion 1, 7 pp., 2005
132005
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Articles 1–20