| Epigenetic regulation of gene expression in cancer: techniques, resources and analysis LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ... Briefings in functional genomics 17 (1), 49-63, 2018 | 122 | 2018 |
| Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks DZ Kelley, EL Flam, E Izumchenko, LV Danilova, HA Wulf, T Guo, ... Cancer research 77 (23), 6538-6550, 2017 | 57 | 2017 |
| PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF GL Stein-O’Brien, JL Carey, WS Lee, M Considine, AV Favorov, E Flam, ... Bioinformatics 33 (12), 1892-1894, 2017 | 48 | 2017 |
| PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF GL Stein-O’Brien, JL Carey, WS Lee, M Considine, AV Favorov, E Flam, ... Bioinformatics 33 (12), 1892-1894, 2017 | 48 | 2017 |
| Discovery and development of differentially methylated regions in human papillomavirus‐related oropharyngeal squamous cell carcinoma S Ren, D Gaykalova, J Wang, T Guo, L Danilova, A Favorov, E Fertig, ... International journal of cancer 143 (10), 2425-2436, 2018 | 38 | 2018 |
| A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers T Guo, A Sakai, B Afsari, M Considine, L Danilova, AV Favorov, ... Cancer research 77 (19), 5248-5258, 2017 | 35 | 2017 |
| Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer B Afsari, T Guo, M Considine, L Florea, LT Kagohara, GL Stein-O’Brien, ... Bioinformatics 34 (11), 1859-1867, 2018 | 14 | 2018 |
| Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer B Afsari, T Guo, M Considine, L Florea, LT Kagohara, GL Stein-O’Brien, ... Bioinformatics 34 (11), 1859-1867, 2018 | 13 | 2018 |
| Differentially methylated super-enhancers regulate target gene expression in human cancer EL Flam, L Danilova, DZ Kelley, E Stavrovskaya, T Guo, M Considine, ... Scientific reports 9 (1), 15034, 2019 | 8 | 2019 |
| Functional characterization of alternatively spliced GSN in head and neck squamous cell carcinoma DZ Kelley, EL Flam, T Guo, LV Danilova, FT Zamuner, C Bohrson, ... Translational Research 202, 109-119, 2018 | 8 | 2018 |
| PatternMarkers and Genome-Wide CoGAPS Analysis in Parallel Sets (GWCoGAPS) for data-driven detection of novel biomarkers via whole transcriptome Non-negative matrix … G Stein-O’Brien, J Carey, W Lee, M Considine, A Favorov, E Flam bioRxiv 83717, 2016 | 2 | 2016 |
| Role of super-enhancers in HPV+ head and neck squamous cell carcinoma FT Zamuner, I Vorontsov, E Flam, V Mukhina, L Danilova, T Ou, ... Cancer Research 79 (13_Supplement), 5206-5206, 2019 | | 2019 |
| Differentially methylated super-enhancers regulate gene expression in human papillomavirus-related head and neck squamous cell carcinoma EL Flam, DZ Kelley, E Stavrovskaya, L Danilova, T Guo, M Considine, ... Cancer Research 78 (13_Supplement), 364-364, 2018 | | 2018 |
| Discovery and development of differentially methylated regions in human papillomavirus-related oropharyngeal squamous cell carcinoma. RSL Ren ShuLing, D Gaykalova, J Wang, T Guo, L Danilova, A Favorov, ... | | 2018 |
| Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer MF Ochs, A Bahman, T Guo, M Considine, L Florea, LT Kagohara, ... Oxford University Press, 2018 | | 2018 |
| Functional characterization of alternatively spliced GSN in head and neck cancer DZ Kelley, EL Flam, T Guo, C Bohrson, M Considine, LV Danilova, ... Cancer Research 77 (13_Supplement), 4474-4474, 2017 | | 2017 |
| The in-parallel whole-genome ChIP-Seq analysis of primary tissues, patient derived xenografts, and cancer cell lines from HPV-relative HNSCC samples DZ Kelley, EL Flam, HA Wulf, T Guo, E Izumchenko, DA Singman, ... Cancer Research 77 (13_Supplement), 2424-2424, 2017 | | 2017 |
| PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF MF Ochs, GL Stein-O'Brien, JL Carey, WS Lee, M Considine, AV Favorov, ... Oxford University Press, 2017 | | 2017 |
| The discovery of novel GSN alternative splicing in head and neck squamous cell carcinoma DA Gaykalova, D Kelley, T Guo, C Bohrson, I Tiscareno, V Zizkova, ... Cancer Research 76 (14_Supplement), 2880-2880, 2016 | | 2016 |
| 69 Mitochondrial dynamics in skeletal muscle insulin resistance and type 2 diabetes Ciaran E. Fealy, Anny Mulya, Christopher L. Axelrod, and John P. Kirwan, Cleveland, Ohio and … F Polito, M Cucinotta, RV Abbritti, A Brogna, S Pergolizzi, C Tomasello, ... | | |
