Matthew Pocock
Matthew Pocock
Computing Science, Newcastle University
Verified email at ncl.ac.uk
Title
Cited by
Cited by
Year
Taverna: a tool for the composition and enactment of bioinformatics workflows
T Oinn, M Addis, J Ferris, D Marvin, M Senger, M Greenwood, T Carver, ...
Bioinformatics 20 (17), 3045-3054, 2004
18262004
The Bioperl toolkit: Perl modules for the life sciences
JE Stajich, D Block, K Boulez, SE Brenner, SA Chervitz, C Dagdigian, ...
Genome research 12 (10), 1611-1618, 2002
17842002
The Ensembl genome database project
T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, ...
Nucleic acids research 30 (1), 38-41, 2002
16102002
Taverna: a tool for building and running workflows of services
D Hull, K Wolstencroft, R Stevens, C Goble, MR Pocock, P Li, T Oinn
Nucleic acids research 34 (suppl_2), W729-W732, 2006
11712006
Taverna: lessons in creating a workflow environment for the life sciences
T Oinn, M Greenwood, M Addis, MN Alpdemir, J Ferris, K Glover, C Goble, ...
Concurrency and computation: Practice and experience 18 (10), 1067-1100, 2006
9312006
BioJava: an open-source framework for bioinformatics
RCG Holland, TA Down, M Pocock, A Prlić, D Huen, K James, S Foisy, ...
Bioinformatics 24 (18), 2096-2097, 2008
2762008
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ...
Nature biotechnology 32 (6), 545-550, 2014
2432014
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 543, 2011
2422011
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 1-9, 2014
732014
SBOL visual: a graphical language for genetic designs
JY Quinn, RS Cox III, A Adler, J Beal, S Bhatia, Y Cai, J Chen, K Clancy, ...
PLoS biology 13 (12), e1002310, 2015
672015
Sharing structure and function in biological design with SBOL 2.0
N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ...
ACS synthetic biology 5 (6), 498-506, 2016
602016
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data
P Li, JI Castrillo, G Velarde, I Wassink, S Soiland-Reyes, S Owen, ...
BMC bioinformatics 9 (1), 334, 2008
552008
Synthetic biology open language (SBOL) version 2.0. 0
B Bartley, J Beal, K Clancy, G Misirli, N Roehner, E Oberortner, M Pocock, ...
Journal of integrative bioinformatics 12 (2), 902-991, 2015
532015
BioJava: open source components for bioinformatics
M Pocock, T Down, T Hubbard
ACM Sigbio Newsletter 20 (2), 10-12, 2000
512000
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1 (1), 8, 2010
492010
The differential gene expression profiles of proximal and distal muscle groups are altered in pre-pathological dysferlin-deficient mice
M von der Hagen, SH Laval, LM Cree, F Haldane, M Pocock, I Wappler, ...
Neuromuscular Disorders 15 (12), 863-877, 2005
442005
An integrated dataset for in silico drug discovery
SJ Cockell, J Weile, P Lord, C Wipat, D Andriychenko, M Pocock, ...
Journal of integrative bioinformatics 7 (3), 15-27, 2010
342010
Synthetic biology open language (SBOL) version 1.1. 0
M Galdzicki, M Wilson, CA Rodriguez, MR Pocock, E Oberortner, L Adam, ...
332012
Synthetic biology open language (SBOL) version 2.2. 0
RS Cox, C Madsen, JA McLaughlin, T Nguyen, N Roehner, B Bartley, ...
Journal of integrative bioinformatics 15 (1), 2018
282018
The SBOL Stack: a platform for storing, publishing, and sharing synthetic biology designs
C Madsen, JA McLaughlin, G Mısırlı, M Pocock, K Flanagan, J Hallinan, ...
ACS synthetic biology 5 (6), 487-497, 2016
262016
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