Andreas Wilm
Andreas Wilm
ImmunoScape
Verified email at immunoscape.com - Homepage
Title
Cited by
Cited by
Year
Clustal W and Clustal X version 2.0
MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ...
bioinformatics 23 (21), 2947-2948, 2007
284862007
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
F Sievers, A Wilm, D Dineen, TJ Gibson, K Karplus, W Li, R Lopez, ...
Molecular systems biology 7 (1), 539, 2011
114602011
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ...
Nucleic Acids Research, 2012
7582012
A benchmark of multiple sequence alignment programs upon structural RNAs
PP Gardner, A Wilm, S Washietl
Nucleic acids research 33 (8), 2433-2439, 2005
3402005
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
I Sović, M Šikić, A Wilm, SN Fenlon, S Chen, N Nagarajan
Nature communications 7 (1), 1-11, 2016
2992016
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
2492015
In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation
JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ...
Molecular cell 62 (4), 603-617, 2016
2192016
Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare
KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ...
Nature microbiology 1 (9), 1-10, 2016
2072016
The nf-core framework for community-curated bioinformatics pipelines
PA Ewels, A Peltzer, S Fillinger, H Patel, J Alneberg, A Wilm, MU Garcia, ...
Nature biotechnology 38 (3), 276-278, 2020
2052020
A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients
NM Nguyen, CNB Tran, LK Phung, KTH Duong, H le Anh Huynh, J Farrar, ...
Journal of Infectious Diseases, 2012
2022012
An enhanced RNA alignment benchmark for sequence alignment programs
A Wilm, I Mainz, G Steger
Algorithms for molecular biology 1 (1), 1-11, 2006
1792006
Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls
S Wang, KR Chng, A Wilm, S Zhao, KL Yang, N Nagarajan, J He
Proceedings of the National Academy of Sciences 111 (33), 12103-12108, 2014
1322014
R-Coffee: a method for multiple alignment of non-coding RNA
A Wilm, DG Higgins, C Notredame
Nucleic acids research 36 (9), e52-e52, 2008
1312008
Sequence embedding for fast construction of guide trees for multiple sequence alignment
G Blackshields, F Sievers, W Shi, A Wilm, DG Higgins
Algorithms for Molecular Biology 5 (1), 1-11, 2010
1232010
INC-Seq: accurate single molecule reads using nanopore sequencing
C Li, KR Chng, EJH Boey, AHQ Ng, A Wilm, N Nagarajan
Gigascience 5 (1), s13742-016-0140-7, 2016
1222016
Genomic landscape of lung adenocarcinoma in East Asians
J Chen, H Yang, ASM Teo, LB Amer, FG Sherbaf, CQ Tan, JJS Alvarez, ...
Nature genetics 52 (2), 177-186, 2020
1042020
Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences
SH Ong, VU Kukkillaya, A Wilm, C Lay, EXP Ho, L Low, ML Hibberd, ...
PloS one 8 (4), e60811, 2013
1042013
Sustainable data analysis with Snakemake
F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ...
F1000Research 10, 2021
1002021
StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time
D Dalli, A Wilm, I Mainz, G Steger
Bioinformatics 22 (13), 1593-1599, 2006
802006
Tissue microbiome profiling identifies an enrichment of specific enteric bacteria in Opisthorchis viverrini associated cholangiocarcinoma
KR Chng, SH Chan, AHQ Ng, C Li, A Jusakul, D Bertrand, A Wilm, ...
EBioMedicine 8, 195-202, 2016
722016
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Articles 1–20