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Julien Lagarde
Julien Lagarde
Flomics Biotech
Verified email at flomics.com - Homepage
Title
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Cited by
Year
An integrated encyclopedia of DNA elements in the human genome.
EP Consortium
Nature 489 (7414), 57-74, 2012
137752012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ...
Nature 447 (7146), 799-816, 2007
59692007
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
54482012
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome Research 22 (9), 1775-1789, 2012
52522012
GENCODE reference annotation for the human and mouse genomes
A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ...
Nucleic acids research 47 (D1), D766-D773, 2019
25392019
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
18882014
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
14402011
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ...
Nature methods 10 (12), 1177, 2013
7632013
GENCODE: producing a reference annotation for ENCODE
J Harrow, F Denoeud, A Frankish, A Reymond, CK Chen, J Chrast, ...
Genome biology 7 (1), S4, 2006
7412006
GENCODE 2021
A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ...
Nucleic Acids Research 49 (D1), D916-D923, 2021
6882021
Towards a complete map of the human long non-coding RNA transcriptome
B Uszczynska-Ratajczak, J Lagarde, A Frankish, R Guigó, R Johnson
Nature Reviews Genetics 19 (9), 535-548, 2018
5172018
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 418, 2012
3672012
EGASP: the human ENCODE genome annotation assessment project
R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde, F Denoeud, ...
Genome biology 7 (1), S2, 2006
3422006
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
3242014
The implications of alternative splicing in the ENCODE protein complement
ML Tress, PL Martelli, A Frankish, GA Reeves, JJ Wesselink, C Yeats, ...
Proceedings of the National Academy of Sciences 104 (13), 5495-5500, 2007
2462007
High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing
J Lagarde, B Uszczynska-Ratajczak, S Carbonell, S Pérez-Lluch, A Abad, ...
Nature genetics 49 (12), 1731-1740, 2017
2452017
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
F Denoeud, P Kapranov, C Ucla, A Frankish, R Castelo, J Drenkow, ...
Genome research 17 (6), 746-759, 2007
2212007
Structured RNAs in the ENCODE selected regions of the human genome
S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ...
Genome research 17 (6), 852-864, 2007
2182007
An encyclopedia of mouse DNA elements (Mouse ENCODE)
EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ...
Genome Biol 13 (8), 418, 2012
1462012
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression
DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ...
Nature communications 6 (1), 1-11, 2015
882015
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