| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 15485 | 2019 |
| The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014 | 3437 | 2014 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2383 | 2017 |
| Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases J Lloyd-Price, C Arze, AN Ananthakrishnan, M Schirmer, J Avila-Pacheco, ... Nature 569 (7758), 655-662, 2019 | 2177 | 2019 |
| Normalization and microbial differential abundance strategies depend upon data characteristics S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... Microbiome 5, 1-18, 2017 | 1794 | 2017 |
| EMPeror: a tool for visualizing high-throughput microbial community data Y Vázquez-Baeza, M Pirrung, A Gonzalez, R Knight Gigascience 2 (1), 2047-217X-2-16, 2013 | 1274 | 2013 |
| Dynamics of the human gut microbiome in inflammatory bowel disease J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ... Nature microbiology 2 (5), 1-7, 2017 | 1140 | 2017 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1014 | 2018 |
| Longitudinal analysis of microbial interaction between humans and the indoor environment S Lax, DP Smith, J Hampton-Marcell, SM Owens, KM Handley, NM Scott, ... Science 345 (6200), 1048-1052, 2014 | 982 | 2014 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 705 | 2018 |
| Advancing our understanding of the human microbiome using QIIME JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ... Methods in enzymology 531, 371-444, 2013 | 649 | 2013 |
| Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018 | 571 | 2018 |
| Meta-analyses of studies of the human microbiota CA Lozupone, J Stombaugh, A Gonzalez, G Ackermann, D Wendel, ... Genome research 23 (10), 1704-1714, 2013 | 494 | 2013 |
| Temporal variability is a personalized feature of the human microbiome GE Flores, JG Caporaso, JB Henley, JR Rideout, D Domogala, J Chase, ... Genome biology 15, 1-13, 2014 | 455 | 2014 |
| QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current protocols in bioinformatics 70 (1), e100, 2020 | 323 | 2020 |
| Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5: 27 S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... | 314 | 2017 |
| Microbiome 101: studying, analyzing, and interpreting gut microbiome data for clinicians C Allaband, D McDonald, Y Vázquez-Baeza, JJ Minich, A Tripathi, ... Clinical gastroenterology and hepatology 17 (2), 218-230, 2019 | 305 | 2019 |
| HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats P Lin, M Bach, M Asquith, AY Lee, L Akileswaran, P Stauffer, S Davin, ... PloS one 9 (8), e105684, 2014 | 302 | 2014 |
| Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection A Weingarden, A González, Y Vázquez-Baeza, S Weiss, G Humphry, ... Microbiome 3, 1-8, 2015 | 276 | 2015 |
| Learning representations of microbe–metabolite interactions JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ... Nature methods 16 (12), 1306-1314, 2019 | 253 | 2019 |
Antonio GonzálezProgrammer Analyst, UC San DiegoVerified email at ucsd.edu
