| Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ... Science 369 (6502), eaav3751, 2020 | 128 | 2020 |
| The future of whole-cell modeling DN Macklin, NA Ruggero, MW Covert Current opinion in biotechnology 28, 111-115, 2014 | 104 | 2014 |
| Determining host metabolic limitations on viral replication via integrated modeling and experimental perturbation EW Birch, NA Ruggero, MW Covert Public Library of Science 8 (10), e1002746, 2012 | 52 | 2012 |
| Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation MV Gutschow, JJ Hughey, NA Ruggero, BT Bajar, SD Valle, MW Covert PloS one 8 (1), e53222, 2013 | 24 | 2013 |
| Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation. Science 369: eaav3751 DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ... | 5 | 2020 |
| Parameter and state initialization for model training N Ruggero, F Vaggi, MM Shafiei, J Dale US Patent App. 17/649,472, 2023 | | 2023 |
| Scalable experimental workflow for parameter estimation Y Tanouchi, N Ruggero US Patent 11,688,487, 2023 | | 2023 |
| Dynamic coordinating framework for model cell simulations F Russo, J Thompson, N Ruggero US Patent 11,393,555, 2022 | | 2022 |
| Towards a Whole-Cell Model of Growth Rate and Cell Size Control in Escherichia coli NA Ruggero Stanford University, 2017 | | 2017 |
| Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental EW Birch, NA Ruggero, MW Covert | | 2012 |
| Text S1: Method Detail–Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental Perturbation EW Birch, NA Ruggero, MW Covert | | |
