| FATCAT 2.0: towards a better understanding of the structural diversity of proteins Z Li, L Jaroszewski, M Iyer, M Sedova, A Godzik Nucleic acids research 48 (W1), W60-W64, 2020 | 147 | 2020 |
| BiologicalNetworks: visualization and analysis tool for systems biology M Baitaluk, M Sedova, A Ray, A Gupta Nucleic acids research 34 (suppl_2), W466-W471, 2006 | 140 | 2006 |
| Defining the risk of SARS-CoV-2 variants on immune protection MM DeGrace, E Ghedin, MB Frieman, F Krammer, A Grifoni, A Alisoltani, ... Nature 605 (7911), 640-652, 2022 | 133 | 2022 |
| PDBFlex: exploring flexibility in protein structures T Hrabe, Z Li, M Sedova, P Rotkiewicz, L Jaroszewski, A Godzik Nucleic acids research 44 (D1), D423-D428, 2016 | 77 | 2016 |
| The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins L Jaroszewski, M Iyer, A Alisoltani, M Sedova, A Godzik PLoS computational biology 17 (7), e1009147, 2021 | 47 | 2021 |
| Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence M Sedova, L Jaroszewski, A Alisoltani, A Godzik Bioinformatics 36 (15), 4360-4362, 2020 | 39 | 2020 |
| BiologicalNetworks 2.0-an integrative view of genome biology data S Kozhenkov, Y Dubinina, M Sedova, A Gupta, J Ponomarenko, ... BMC bioinformatics 11, 1-14, 2010 | 33 | 2010 |
| BiologicalNetworks-tools enabling the integration of multi-scale data for the host-pathogen studies S Kozhenkov, M Sedova, Y Dubinina, A Gupta, A Ray, J Ponomarenko, ... BMC Systems Biology 5, 1-14, 2011 | 23 | 2011 |
| Camera 2.0: A data-centric metagenomics community infrastructure driven by scientific workflows I Altintas, AW Lin, J Chen, C Churas, M Gujral, S Sun, W Li, R Manansala, ... 2010 6th World Congress on Services, 352-359, 2010 | 21 | 2010 |
| Protael: protein data visualization library for the web M Sedova, L Jaroszewski, A Godzik Bioinformatics 32 (4), 602-604, 2016 | 13 | 2016 |
| LUD, a new protein domain associated with lactate utilization WC Hwang, C Bakolitsa, M Punta, PC Coggill, A Bateman, HL Axelrod, ... BMC bioinformatics 14, 1-9, 2013 | 13 | 2013 |
| Difference contact maps: From what to why in the analysis of the conformational flexibility of proteins M Iyer, Z Li, L Jaroszewski, M Sedova, A Godzik PloS one 15 (3), e0226702, 2020 | 11 | 2020 |
| Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets M Sedova, M Iyer, Z Li, L Jaroszewski, KW Post, T Hrabe, E Porta-Pardo, ... Nucleic acids research 47 (D1), D895-D899, 2019 | 11 | 2019 |
| PubServer: literature searches by homology L Jaroszewski, L Koska, M Sedova, A Godzik Nucleic acids research 42 (W1), W430-W435, 2014 | 10 | 2014 |
| Monitoring for SARS-CoV-2 drug resistance mutations in broad viral populations M Sedova, L Jaroszewski, M Iyer, A Godzik bioRxiv, 2022.05. 27.493798, 2022 | 9 | 2022 |
| What the protein data bank tells us about the evolutionary conservation of protein conformational diversity M Iyer, L Jaroszewski, M Sedova, A Godzik Protein Science 31 (7), e4325, 2022 | 6 | 2022 |
| The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins. bioRxiv [Preprint]. August 10, 2020 L Jaroszewski, M Iyer, A Alisoltani, M Sedova, A Godzik | 6 | |
| Extending the data model for data-centric metagenomics analysis using scientific workflows in camera I Altintas, J Chen, M Sedova, A Gupta, S Sun, AW Lin, M Gujral, ... 2010 Sixth IEEE International Conference on e-Science Workshops, 49-56, 2010 | 4 | 2010 |
| Large scale analysis of smoking-induced changes in the tumor immune microenvironment A Alisoltani, X Qiu, L Jaroszewski, M Sedova, Z Li, A Godzik bioRxiv, 2020.03. 06.981225, 2020 | 3 | 2020 |
| ModFlex: Towards function focused protein modeling M Sedova, L Jaroszewski, M Iyer, Z Li, A Godzik Journal of molecular biology 433 (11), 166828, 2021 | 2 | 2021 |
