| CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ... PLoS Comput Biol 8 (10), e1002708, 2012 | 714 | 2012 |
| CAVER: a new tool to explore routes from protein clefts, pockets and cavities M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský BMC bioinformatics 7 (1), 316, 2006 | 553 | 2006 |
| Strategies for stabilization of enzymes in organic solvents V Stepankova, S Bidmanova, T Koudelakova, Z Prokop, R Chaloupkova, ... Acs Catalysis 3 (12), 2823-2836, 2013 | 398 | 2013 |
| PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ... PLoS Comput Biol 10 (1), e1003440, 2014 | 393 | 2014 |
| Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ... Nature chemical biology 5 (10), 727-733, 2009 | 251 | 2009 |
| HotSpot Wizard: a web server for identification of hot spots in protein engineering A Pavelka, E Chovancova, J Damborsky Nucleic acids research 37 (suppl_2), W376-W383, 2009 | 178 | 2009 |
| Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26. Y Nagata, K Miyauchi, J Damborsky, K Manova, A Ansorgova, M Takagi Applied and Environmental Microbiology 63 (9), 3707-3710, 1997 | 176 | 1997 |
| Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26, J Marek, J Vévodová, IK Smatanová, Y Nagata, LA Svensson, J Newman, ... Biochemistry 39 (46), 14082-14086, 2000 | 175 | 2000 |
| Computational tools for designing and engineering enzymes J Damborsky, J Brezovsky Current opinion in chemical biology 19, 8-16, 2014 | 170 | 2014 |
| Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel R Chaloupková, J Sýkorová, Z Prokop, A Jesenská, M Monincová, ... Journal of Biological Chemistry 278 (52), 52622-52628, 2003 | 169 | 2003 |
| Biodegradation of 1, 2, 3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene T Bosma, J Damborský, G Stucki, DB Janssen Applied and environmental microbiology 68 (7), 3582-3587, 2002 | 167 | 2002 |
| Gates of enzymes A Gora, J Brezovsky, J Damborsky Chemical reviews 113 (8), 5871-5923, 2013 | 148 | 2013 |
| Haloalkane dehalogenases: biotechnological applications T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ... Biotechnology Journal 8 (1), 32-45, 2013 | 141 | 2013 |
| CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ... Bioinformatics 30 (18), 2684-2685, 2014 | 138 | 2014 |
| Computational tools for designing and engineering biocatalysts J Damborsky, J Brezovsky Current opinion in chemical biology 13 (1), 26-34, 2009 | 130 | 2009 |
| Phylogenetic analysis of haloalkane dehalogenases E Chovancová, J Kosinski, JM Bujnicki, J Damborský PROTEINS: Structure, Function, and Bioinformatics 67 (2), 305-316, 2007 | 124 | 2007 |
| Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering Z Prokop, Y Sato, J Brezovsky, T Mozga, R Chaloupkova, T Koudelakova, ... Angewandte Chemie International Edition 49 (35), 6111-6115, 2010 | 118 | 2010 |
| Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel T Koudelakova, R Chaloupkova, J Brezovsky, Z Prokop, E Sebestova, ... Angewandte Chemie 125 (7), 2013-2017, 2013 | 117 | 2013 |
| Substrate specificity of haloalkane dehalogenases T Koudelakova, E Chovancova, J Brezovsky, M Monincova, A Fortova, ... Biochemical Journal 435 (2), 345-354, 2011 | 112 | 2011 |
| Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 Z Prokop, M Monincová, R Chaloupková, M Klvaňa, Y Nagata, ... Journal of Biological Chemistry 278 (46), 45094-45100, 2003 | 112 | 2003 |
Jan BrezovskyLaboratory of Biomolecular Interactions and Transport, IIMCB in Warsaw and IBMIB, AMU in PoznanVerified email at iimcb.gov.pl
