Jiri Damborsky
Jiri Damborsky
Verified email at chemi.muni.cz - Homepage
Cited by
Cited by
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures
E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ...
PLoS Comput Biol 8 (10), e1002708, 2012
CAVER: a new tool to explore routes from protein clefts, pockets and cavities
M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský
BMC bioinformatics 7 (1), 316, 2006
Strategies for stabilization of enzymes in organic solvents
V Stepankova, S Bidmanova, T Koudelakova, Z Prokop, R Chaloupkova, ...
Acs Catalysis 3 (12), 2823-2836, 2013
PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations
J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ...
PLoS Comput Biol 10 (1), e1003440, 2014
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate
M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ...
Nature chemical biology 5 (10), 727-733, 2009
HotSpot Wizard: a web server for identification of hot spots in protein engineering
A Pavelka, E Chovancova, J Damborsky
Nucleic acids research 37 (suppl_2), W376-W383, 2009
Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26.
Y Nagata, K Miyauchi, J Damborsky, K Manova, A Ansorgova, M Takagi
Applied and Environmental Microbiology 63 (9), 3707-3710, 1997
Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26,
J Marek, J Vévodová, IK Smatanová, Y Nagata, LA Svensson, J Newman, ...
Biochemistry 39 (46), 14082-14086, 2000
Computational tools for designing and engineering enzymes
J Damborsky, J Brezovsky
Current opinion in chemical biology 19, 8-16, 2014
Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel
R Chaloupková, J Sýkorová, Z Prokop, A Jesenská, M Monincová, ...
Journal of Biological Chemistry 278 (52), 52622-52628, 2003
Biodegradation of 1, 2, 3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene
T Bosma, J Damborský, G Stucki, DB Janssen
Applied and environmental microbiology 68 (7), 3582-3587, 2002
Gates of enzymes
A Gora, J Brezovsky, J Damborsky
Chemical reviews 113 (8), 5871-5923, 2013
Haloalkane dehalogenases: biotechnological applications
T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ...
Biotechnology Journal 8 (1), 32-45, 2013
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ...
Bioinformatics 30 (18), 2684-2685, 2014
Computational tools for designing and engineering biocatalysts
J Damborsky, J Brezovsky
Current opinion in chemical biology 13 (1), 26-34, 2009
Phylogenetic analysis of haloalkane dehalogenases
E Chovancová, J Kosinski, JM Bujnicki, J Damborský
PROTEINS: Structure, Function, and Bioinformatics 67 (2), 305-316, 2007
Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering
Z Prokop, Y Sato, J Brezovsky, T Mozga, R Chaloupkova, T Koudelakova, ...
Angewandte Chemie International Edition 49 (35), 6111-6115, 2010
Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel
T Koudelakova, R Chaloupkova, J Brezovsky, Z Prokop, E Sebestova, ...
Angewandte Chemie 125 (7), 2013-2017, 2013
Substrate specificity of haloalkane dehalogenases
T Koudelakova, E Chovancova, J Brezovsky, M Monincova, A Fortova, ...
Biochemical Journal 435 (2), 345-354, 2011
Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26
Z Prokop, M Monincová, R Chaloupková, M Klvaňa, Y Nagata, ...
Journal of Biological Chemistry 278 (46), 45094-45100, 2003
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