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Rolf Sommer Kaas
Rolf Sommer Kaas
Research Scientist
Verified email at food.dtu.dk
Title
Cited by
Cited by
Year
ResFinder 4.0 for predictions of phenotypes from genotypes
V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ...
Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020
16592020
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
KG Joensen, F Scheutz, O Lund, H Hasman, RS Kaas, EM Nielsen, ...
Journal of clinical microbiology 52 (5), 1501-1510, 2014
12302014
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
10442014
Solving the problem of comparing whole bacterial genomes across different sequencing platforms
RS Kaas, P Leekitcharoenphon, FM Aarestrup, O Lund
PloS one 9 (8), e104984, 2014
7042014
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1124, 2019
6612019
Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015
H Hasman, AM Hammerum, F Hansen, RS Hendriksen, B Olesen, ...
Eurosurveillance 20 (49), 30085, 2015
4462015
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
E Zankari, H Hasman, RS Kaas, AM Seyfarth, Y Agersų, O Lund, ...
Journal of antimicrobial chemotherapy 68 (4), 771-777, 2013
3692013
Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak
RS Hendriksen, LB Price, JM Schupp, JD Gillece, RS Kaas, ...
MBio 2 (4), 10.1128/mbio. 00157-11, 2011
3472011
Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica
P Leekitcharoenphon, EM Nielsen, RS Kaas, O Lund, FM Aarestrup
PloS one 9 (2), e87991, 2014
2632014
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
RS Kaas, C Friis, DW Ussery, FM Aarestrup
BMC genomics 13 (1), 1-13, 2012
2632012
ResFinder–an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
AF Florensa, RS Kaas, PTLC Clausen, D Aytan-Aktug, FM Aarestrup
Microbial Genomics 8 (1), 2022
1802022
snpTree-a web-server to identify and construct SNP trees from whole genome sequence data
P Leekitcharoenphon, RS Kaas, MCF Thomsen, C Friis, S Rasmussen, ...
BMC genomics 13 (7), 1-8, 2012
982012
Genomic signature of multidrug-resistant Salmonella enterica serovar Typhi isolates related to a massive outbreak in Zambia between 2010 and 2012
RS Hendriksen, P Leekitcharoenphon, O Lukjancenko, ...
Journal of clinical microbiology 53 (1), 262-272, 2015
942015
Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?
L Roer, RS Hendriksen, P Leekitcharoenphon, O Lukjancenko, RS Kaas, ...
Msystems 1 (3), 10.1128/msystems. 00009-16, 2016
882016
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand
A Siriphap, P Leekitcharoenphon, RS Kaas, C Theethakaew, ...
PLoS One 12 (1), e0169324, 2017
862017
Veillonella, firmicutes: microbes disguised as gram negatives
T Vesth, A Ozen, SC Andersen, RS Kaas, O Lukjancenko, J Bohlin, ...
Standards in genomic sciences 9 (2), 431-448, 2013
642013
An assessment of different genomic approaches for inferring phylogeny of Listeria monocytogenes
C Henri, P Leekitcharoenphon, HA Carleton, N Radomski, RS Kaas, ...
Frontiers in microbiology 8, 2351, 2017
612017
Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease
KG Joensen, ALŲ Engsbro, O Lukjancenko, RS Kaas, O Lund, H Westh, ...
European Journal of Clinical Microbiology & Infectious Diseases 36, 1325-1338, 2017
432017
European freshwater VHSV genotype Ia isolates divide into two distinct subpopulations
S Kahns, HF Skall, RS Kaas, H Korsholm, BB Jensen, SP Jonstrup, ...
Diseases of Aquatic Organisms 99 (1), 23-35, 2012
432012
The COMPARE data hubs
C Amid, N Pakseresht, N Silvester, S Jayathilaka, O Lund, LD Dynovski, ...
Database 2019, baz136, 2019
332019
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