André Leier
Title
Cited by
Cited by
Year
Cryptography with DNA binary strands
A Leier, C Richter, W Banzhaf, H Rauhe
Biosystems 57 (1), 13-22, 2000
3052000
Oscillatory regulation of Hes1: discrete stochastic delay modelling and simulation
M Barrio, K Burrage, A Leier, T Tian
PLoS Comput Biol 2 (9), e117, 2006
2752006
iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
Z Chen, P Zhao, F Li, A Leier, TT Marquez-Lago, Y Wang, GI Webb, ...
Bioinformatics 34 (14), 2499-2502, 2018
1932018
Network topology and the evolution of dynamics in an artificial genetic regulatory network model created by whole genome duplication and divergence
PD Kuo, W Banzhaf, A Leier
Biosystems 85 (3), 177-200, 2006
1222006
PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy
J Song, F Li, A Leier, TT Marquez-Lago, T Akutsu, G Haffari, KC Chou, ...
Bioinformatics 34 (4), 684-687, 2018
1052018
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome
F Li, C Li, TT Marquez-Lago, A Leier, T Akutsu, AW Purcell, A Ian Smith, ...
Bioinformatics 34 (24), 4223-4231, 2018
1012018
iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data
Z Chen, P Zhao, F Li, TT Marquez-Lago, A Leier, J Revote, Y Zhu, ...
Briefings in bioinformatics 21 (3), 1047-1057, 2020
922020
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles
J Wang, B Yang, J Revote, A Leier, TT Marquez-Lago, G Webb, J Song, ...
Bioinformatics 33 (17), 2756-2758, 2017
922017
Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors
J Wang, B Yang, A Leier, TT Marquez-Lago, M Hayashida, A Rocker, ...
Bioinformatics 34 (15), 2546-2555, 2018
782018
Generalized binomial -leap method for biochemical kinetics incorporating both delay and intrinsic noise
A Leier, TT Marquez-Lago, K Burrage
The Journal of chemical physics 128 (20), 05B623, 2008
662008
MULTiPly: a novel multi-layer predictor for discovering general and specific types of promoters
M Zhang, F Li, TT Marquez-Lago, A Leier, C Fan, CK Kwoh, KC Chou, ...
Bioinformatics 35 (17), 2957-2965, 2019
622019
PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection
J Song, H Wang, J Wang, A Leier, T Marquez-Lago, B Yang, Z Zhang, ...
Scientific Reports 7 (1), 1-19, 2017
572017
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods
F Li, Y Wang, C Li, TT Marquez-Lago, A Leier, ND Rawlings, G Haffari, ...
Briefings in bioinformatics 20 (6), 2150-2166, 2019
562019
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework
Y Zhang, R Xie, J Wang, A Leier, TT Marquez-Lago, T Akutsu, GI Webb, ...
Briefings in bioinformatics 20 (6), 2185-2199, 2019
562019
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites
Z Chen, X Liu, F Li, C Li, T Marquez-Lago, A Leier, T Akutsu, GI Webb, ...
Briefings in bioinformatics 20 (6), 2267-2290, 2019
542019
Stochastic simulation for spatial modelling of dynamic processes in a living cell
K Burrage, PM Burrage, A Leier, T Marquez-Lago, DV Nicolau
Design and Analysis of Biomolecular Circuits, 43-62, 2011
47*2011
Evolving dynamics in an artificial regulatory network model
PD Kuo, A Leier, W Banzhaf
International Conference on Parallel Problem Solving from Nature, 571-580, 2004
462004
A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction
S Mei, F Li, A Leier, TT Marquez-Lago, K Giam, NP Croft, T Akutsu, ...
Briefings in bioinformatics 21 (4), 1119-1135, 2020
442020
Modelling and simulation techniques for membrane biology
K Burrage, J Hancock, A Leier, DV Nicolau Jr
Briefings in Bioinformatics 8 (4), 234-244, 2007
442007
Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI
Y An, J Wang, C Li, A Leier, T Marquez-Lago, J Wilksch, Y Zhang, ...
Briefings in bioinformatics 19 (1), 148-161, 2018
402018
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