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Lucian Smith
Lucian Smith
Verified email at uw.edu
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Cited by
Cited by
Year
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
2022020
Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ...
Cell 183 (1), 197-210. e32, 2020
1662020
Antimony: a modular model definition language
LP Smith, FT Bergmann, D Chandran, HM Sauro
Bioinformatics 25 (18), 2452-2454, 2009
1352009
Tellurium: an extensible python-based modeling environment for systems and synthetic biology
K Choi, JK Medley, M König, K Stocking, L Smith, S Gu, HM Sauro
Biosystems 171, 74-79, 2018
1262018
Comparing likelihood and Bayesian coalescent estimation of population parameters
MK Kuhner, LP Smith
Genetics 175 (1), 155-165, 2007
1152007
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2
M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ...
Journal of integrative bioinformatics 16 (2), 20190021, 2019
1092019
The Systems Biology Markup Language (SBML): language specification for level 3 version 1 core
M Hucka, FT Bergmann, S Hoops, SM Keating, S Sahle, JC Schaff, ...
Journal of integrative bioinformatics 12 (2), 382-549, 2015
902015
The systems biology markup language (SBML): language specification for level 3 version 2 core
M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ...
Journal of integrative bioinformatics 15 (1), 20170081, 2018
812018
The systems biology markup language (SBML): Language specification for level 3 version 1 core
L Smith, D Wilkinson, M Hucka, F Bergmann, S Hoops, S Keating, S Sahle, ...
Nature Precedings, 1-1, 2010
782010
Protein engineering strategies for designing more stable hemoglobin-based blood substitutes
JS Olson, RF Eich, LP Smith, JJ Warren, BC Knowles
Artificial Cells, Blood Substitutes, and Biotechnology 25 (1-2), 227-241, 1997
691997
Tellurium notebooks—an environment for reproducible dynamical modeling in systems biology
JK Medley, K Choi, M König, L Smith, S Gu, J Hellerstein, SC Sealfon, ...
PLoS computational biology 14 (6), e1006220, 2018
592018
A reappraisal of how to build modular, reusable models of biological systems
ML Neal, MT Cooling, LP Smith, CT Thompson, HM Sauro, BE Carlson, ...
PLoS computational biology 10 (10), e1003849, 2014
572014
SBML level 3 package: hierarchical model composition, version 1 release 3
LP Smith, M Hucka, S Hoops, A Finney, M Ginkel, CJ Myers, I Moraru, ...
Journal of integrative bioinformatics 12 (2), 603-659, 2015
512015
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
D Waltemath, M Golebiewski, ML Blinov, P Gleeson, H Hermjakob, ...
Journal of integrative bioinformatics 17 (2-3), 20200005, 2020
312020
SBML level 3 package: groups, version 1 release 1
M Hucka, LP Smith
Journal of integrative bioinformatics 13 (3), 8-29, 2016
292016
Apoglobin stability is the major factor governing both cell-free and in vivo expression of holomyoglobin*♦
PP Samuel, LP Smith, GN Phillips, JS Olson
Journal of Biological Chemistry 290 (39), 23479-23495, 2015
282015
Systems biology markup language (SBML) level 2 version 5: structures and facilities for model definitions
M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novere, ...
Journal of integrative bioinformatics 12 (2), 731-901, 2015
282015
LAMARC, Version 2. 0
MK Kuhner, J Yamato, P Beerli, LP Smith, E Rynes, E Walkup, C Li, ...
University of Washington, Seattle.[Online.] Available at evolution. gs …, 2005
282005
Tellurium: A python based modeling and reproducibility platform for systems biology
K Choi, JK Medley, C Cannistra, M König, L Smith, K Stocking, HM Sauro
BioRxiv, 054601, 2016
222016
Systems biology markup language (SBML)
M Hucka, R Jung
Neuroinformatics 6 (4), 257-277, 2017
212017
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Articles 1–20