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Jaap Heringa
Jaap Heringa
Professor of Bioinformatics, Vrije Universiteit Amsterdam
Verified email at vu.nl
Title
Cited by
Cited by
Year
The FAIR Guiding Principles for scientific data management and stewardship
MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ...
Scientific data 3 (1), 1-9, 2016
125042016
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame, DG Higgins, J Heringa
Journal of molecular biology 302 (1), 205-217, 2000
85562000
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
VA Simossis, J Heringa
Nucleic acids research 33 (suppl_2), W289-W294, 2005
5772005
An analysis of protein domain linkers: their classification and role in protein folding
RA George, J Heringa
Protein engineering 15 (11), 871-879, 2002
5102002
A simple and fast secondary structure prediction method using hidden neural networks
K Lin, VA Simossis, WR Taylor, J Heringa
Bioinformatics 21 (2), 152-159, 2005
3572005
The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3: 160018
MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ...
2982016
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid
TJ Gibson, JD Thompson, J Heringa
FEBS letters 324 (3), 361-366, 1993
2631993
FAIR principles: interpretations and implementation considerations
A Jacobsen, R de Miranda Azevedo, N Juty, D Batista, S Coles, R Cornet, ...
Data intelligence 2 (1-2), 10-29, 2020
2342020
The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data, 3, 160018
MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ...
As Open as Possible, as Closed as Necessary’–Managing legal and owner 3, 2016
2252016
General secretion signal for the mycobacterial type VII secretion pathway
MH Daleke, R Ummels, P Bawono, J Heringa, ...
Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012
2212012
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment
J Heringa
Computers & chemistry 23 (3-4), 341-364, 1999
1971999
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils
D Langosch, J Heringa
Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998
1891998
Tracking repeats using significance and transitivity
R Szklarczyk, J Heringa
Bioinformatics 20 (suppl_1), i311-i317, 2004
1632004
Protein secondary structure prediction
W Pirovano, J Heringa
Data Mining Techniques for the Life Sciences, 327-348, 2010
1482010
The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016)
M Wilkinson, M Dumontier, I Aalbersberg, G Appleton, M Axton, A Baak, ...
1422016
Homology-extended sequence alignment
VA Simossis, J Kleinjung, J Heringa
Nucleic acids research 33 (3), 816-824, 2005
1412005
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins
W Pirovano, KA Feenstra, J Heringa
Bioinformatics 24 (4), 492-497, 2008
1382008
The ontogeny of a dominance hierarchy in colonies of the bumblebee Bombus terrestris (Hymenoptera, Apidae)
A Van Doorn, J Heringa
Insectes soc 33 (3), 25, 1986
1381986
Side-chain clusters in protein structures and their role in protein folding
J Heringa, P Argos
Journal of molecular biology 220 (1), 151-171, 1991
1261991
SnapDRAGON: a method to delineate protein structural domains from sequence data
RA George, J Heringa
Journal of molecular biology 316 (3), 839-851, 2002
1202002
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