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Malte Herold
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Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential
L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ...
Nature communications 9 (1), 1-14, 2018
1762018
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
S Narayanasamy, Y Jarosz, EEL Muller, A Heintz-Buschart, M Herold, ...
Genome biology 17 (1), 1-21, 2016
1002016
Deep neural networks outperform human expert's capacity in characterizing bioleaching bacterial biofilm composition
A Buetti-Dinh, V Galli, S Bellenberg, O Ilie, M Herold, S Christel, ...
Biotechnology Reports 22, e00321, 2019
742019
Using metabolic networks to resolve ecological properties of microbiomes
EEL Muller, K Faust, S Widder, M Herold, SM Arbas, P Wilmes
Current Opinion in Systems Biology 8, 73-80, 2018
622018
Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilumT
S Christel, M Herold, S Bellenberg, M El Hajjami, A Buetti-Dinh, IV Pivkin, ...
Applied and environmental microbiology 84 (3), e02091-17, 2018
612018
Evolving social contact patterns during the COVID-19 crisis in Luxembourg
A Latsuzbaia, M Herold, JP Bertemes, J Mossong
PloS one 15 (8), e0237128, 2020
492020
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
M Herold, S Martínez Arbas, S Narayanasamy, AR Sheik, ...
Nature communications 11 (1), 1-14, 2020
292020
Weak Iron Oxidation by Sulfobacillus thermosulfidooxidans Maintains a Favorable Redox Potential for Chalcopyrite Bioleaching
S Christel, M Herold, S Bellenberg, A Buetti-Dinh, M El Hajjami, IV Pivkin, ...
Frontiers in microbiology 9, 3059, 2018
292018
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics
S Martínez Arbas, S Narayanasamy, M Herold, LA Lebrun, ...
Nature microbiology 6 (1), 123-135, 2021
262021
Automated microscopic analysis of metal sulfide colonization by acidophilic microorganisms
S Bellenberg, A Buetti-Dinh, V Galli, O Ilie, M Herold, S Christel, ...
Applied and environmental microbiology 84 (20), e01835-18, 2018
162018
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and …
A Buetti-Dinh, M Herold, S Christel, M El Hajjami, F Delogu, O Ilie, ...
BMC bioinformatics 21 (1), 1-15, 2020
92020
First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ
EEL Muller, S Narayanasamy, M Zeimes, CC Laczny, LA Lebrun, ...
Standards in Genomic Sciences 12 (1), 1-8, 2017
92017
Genome Sequencing of SARS-CoV-2 allows monitoring of variants of concern through wastewater
M Herold, AF d’Hérouël, P May, F Delogu, A Wienecke-Baldacchino, ...
Water 13 (21), 3018, 2021
82021
Identification, recovery, and refinement of hitherto undescribed population-level genomes from the human gastrointestinal tract
CC Laczny, EEL Muller, A Heintz-Buschart, M Herold, LA Lebrun, ...
Frontiers in microbiology 7, 884, 2016
82016
Investigating Major Recurring Campylobacter jejuni Lineages in Luxembourg Using Four Core or Whole Genome Sequencing Typing Schemes
M Nennig, AK Llarena, M Herold, J Mossong, C Penny, S Losch, O Tresse, ...
Frontiers in cellular and infection microbiology 10, 608020, 2021
72021
Systems biology of acidophile biofilms for efficient metal extraction
A Buetti-Dinh, M Herold, S Christel, ME Hajjami, S Bellenberg, O Ilie, ...
Scientific Data 7 (1), 1-10, 2020
62020
Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential. Nat Commun. 2018
L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ...
62018
Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies
S Martínez Arbas, SB Busi, P Queirós, L de Nies, M Herold, P May, ...
Frontiers in Genetics 12, 666244, 2021
52021
IMP: a pipeline for reproducible integrated metagenomic and metatranscriptomic analyses
S Narayanasamy, Y Jarosz, EEL Muller, CC Laczny, M Herold, A Kaysen, ...
bioRxiv, 039263, 2016
32016
Systems Biology of Acidophile Biofilms for Efficient Metal Extraction
S Christel, M Dopson, M Vera, W Sand, M Herold, P Wilmes, A Buetti-Dinh, ...
Advanced Materials Research 1130, 312-315, 2015
12015
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Articles 1–20