Catherine Mooney

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Gianluca PollastriAssociate Professor, University College DublinVerified email at ucd.ie
Denis ShieldsProfessor of Clinical Bioinformatics, University College DublinVerified email at ucd.ie
Professor David C. HenshallDirector, FutureNeuro, SFI Research Centre, RCSIVerified email at rcsi.ie
Alberto J.M. MartinCentro de Genómica y Bioinformática, Facultad de ciencias, Universidad MayorVerified email at umayor.cl
Brett A. BeckerUniversity College DublinVerified email at ucd.ie
Eva Jimenez-MateosRoyal College of Surgeons in IrelandVerified email at rcsi.ie
Rana Mumtaz RaoofUniversity of Mosul, college of medicineVerified email at uomosul.edu.iq
Niall Haslamaxial3dVerified email at axial3d.com
ian walshBioprocessing technology instituteVerified email at bti.a-star.edu.sg
Niamh M C ConnollyRoyal College of Surgeons in IrelandVerified email at rcsi.ie
Richard J. FitzGeraldDepartment of Life Sciences, University of Limerick, Limerick, Ireland.Verified email at ul.ie
Cristina R ReschkeLecturer, Royal College of Surgeons in IrelandVerified email at rcsi.com
Gary BrennanAssistant Professor, University College DublinVerified email at ucd.ie
Sebastian BauerEpilepsiezentrum Frankfurt Rhein-Main, Universitätsklinikum Frankfurt, Klinik für Neurologie, GoetheVerified email at med.uni-frankfurt.de
Felix RosenowGoethe-Universität FrankfurtVerified email at med.uni-frankfurt.de
Jochen H M PrehnRoyal College of Surgeons in Ireland University of Medicine and Health SciencesVerified email at rcsi.ie
Alice B. NongoniermaDepartment of Life Sciences, University of Limerick, IrelandVerified email at ul.ie
Davide BaùBioinformatics manager at IgenomixVerified email at igenomix.com
Luiz Fernando Almeida SilvaRoyal College of Surgeons in IrelandVerified email at rcsi.ie
Norman E. DaveyInstitute Of Cancer Research, LondonVerified email at icr.ac.uk

Catherine Mooney

Assistant Professor, School of Computer Science, University College Dublin

Verified email at ucd.ie

Machine learning computational biology bioinformatics biomarkers computational medicine


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Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity C Mooney, NJ Haslam, G Pollastri, DC Shields PloS one 7 (10), e45012, 2012	174	2012
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information G Pollastri, AJM Martin, C Mooney, A Vullo BMC bioinformatics 8 (1), 1-12, 2007	144	2007
Distill: a suite of web servers for the prediction of one-, two-and three-dimensional structural features of proteins D Baú, AJM Martin, C Mooney, A Vullo, I Walsh, G Pollastri BMC bioinformatics 7 (1), 1-8, 2006	95	2006
Inhibition of dipeptidyl peptidase IV and xanthine oxidase by amino acids and dipeptides AB Nongonierma, C Mooney, DC Shields, RJ FitzGerald Food Chemistry 141 (1), 644-653, 2013	90	2013
CPPpred: prediction of cell penetrating peptides TA Holton, G Pollastri, DC Shields, C Mooney Bioinformatics 29 (23), 3094-3096, 2013	87	2013
In silico approaches to predict the potential of milk protein-derived peptides as dipeptidyl peptidase IV (DPP-IV) inhibitors AB Nongonierma, C Mooney, DC Shields, RJ FitzGerald Peptides 57, 43-51, 2014	77	2014
Prediction of short linear protein binding regions C Mooney, G Pollastri, DC Shields, NJ Haslam Journal of molecular biology 415 (1), 193-204, 2012	72	2012
microRNA targeting of the P2X7 purinoceptor opposes a contralateral epileptogenic focus in the hippocampus EM Jimenez-Mateos, M Arribas-Blazquez, A Sanz-Rodriguez, ... Scientific reports 5 (1), 1-17, 2015	64	2015
Predictive modelling of angiotensin converting enzyme inhibitory dipeptides R Norris, F Casey, RJ FitzGerald, D Shields, C Mooney Food Chemistry 133 (4), 1349-1354, 2012	63	2012
Cerebrospinal fluid microRNAs are potential biomarkers of temporal lobe epilepsy and status epilepticus R Raoof, EM Jimenez-Mateos, S Bauer, B Tackenberg, F Rosenow, ... Scientific reports 7 (1), 1-17, 2017	61	2017
SCLpred: protein subcellular localization prediction by N-to-1 neural networks C Mooney, YH Wang, G Pollastri Bioinformatics 27 (20), 2812-2819, 2011	60	2011
Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks I Walsh, D Baù, AJM Martin, C Mooney, A Vullo, G Pollastri BMC structural biology 9 (1), 1-20, 2009	54	2009
Effective compiler error message enhancement for novice programming students BA Becker, G Glanville, R Iwashima, C McDonnell, K Goslin, C Mooney Computer Science Education 26 (2-3), 148-175, 2016	53	2016
Protein structural motif prediction in multidimensional ø-ψ space leads to improved secondary structure prediction C Mooney, A Vullo, G Pollastri Journal of Computational Biology 13 (8), 1489-1502, 2006	49	2006
Mutations in gamma adducin are associated with inherited cerebral palsy MC Kruer, T Jepperson, S Dutta, RD Steiner, E Cottenie, L Sanford, ... Annals of neurology 74 (6), 805-814, 2013	48	2013
Marked variability in the extent of protein disorder within and between viral families R Pushker, C Mooney, NE Davey, JM Jacqué, DC Shields PloS one 8 (4), e60724, 2013	46	2013
Beyond the twilight zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information C Mooney, G Pollastri Proteins: Structure, Function, and Bioinformatics 77 (1), 181-190, 2009	46	2009
PeptideLocator: prediction of bioactive peptides in protein sequences C Mooney, NJ Haslam, TA Holton, G Pollastri, DC Shields Bioinformatics 29 (9), 1120-1126, 2013	44	2013
Dual-center, dual-platform microRNA profiling identifies potential plasma biomarkers of adult temporal lobe epilepsy R Raoof, S Bauer, H El Naggar, NMC Connolly, GP Brennan, E Brindley, ... EBioMedicine 38, 127-141, 2018	36	2018
EpimiRBase: a comprehensive database of microRNA-epilepsy associations C Mooney, BA Becker, R Raoof, DC Henshall Bioinformatics 32 (9), 1436-1438, 2016	28	2016

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