Chun Jimmie Ye
Title
Cited by
Cited by
Year
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature Biotechnology 23 (1), 137, 2005
14842005
Generation of knock-in primary human T cells using Cas9 ribonucleoproteins
K Schumann, S Lin, E Boyer, DR Simeonov, M Subramaniam, RE Gate, ...
Proceedings of the National Academy of Sciences 112 (33), 10437-10442, 2015
4732015
Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes
T Raj, K Rothamel, S Mostafavi, C Ye, MN Lee, JM Replogle, T Feng, ...
Science 344 (6183), 519-523, 2014
3712014
Common genetic variants modulate pathogen-sensing responses in human dendritic cells
MN Lee, C Ye, AC Villani, T Raj, W Li, TM Eisenhaure, SH Imboywa, ...
Science 343 (6175), 2014
3322014
A genome-wide CRISPR screen in primary immune cells to dissect regulatory networks
O Parnas, M Jovanovic, TM Eisenhaure, RH Herbst, A Dixit, CJ Ye, ...
Cell 162 (3), 675-686, 2015
2872015
CRISPR/Cas9-mediated PD-1 disruption enhances anti-tumor efficacy of human chimeric antigen receptor T cells
LJ Rupp, K Schumann, KT Roybal, RE Gate, CJ Ye, WA Lim, A Marson
Scientific Reports 7 (1), 737, 2017
2652017
Multiplexed droplet single-cell RNA-sequencing using natural genetic variation
HM Kang, M Subramaniam, S Targ, M Nguyen, L Maliskova, E McCarthy, ...
Nature Biotechnology 36 (1), 89, 2018
2332018
Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing
A Kirby, A Gnirke, DB Jaffe, V Barešová, N Pochet, B Blumenstiel, C Ye, ...
Nature Genetics 45 (3), 299, 2013
1882013
Intersection of population variation and autoimmunity genetics in human T cell activation
CJ Ye, T Feng, HK Kwon, T Raj, MT Wilson, N Asinovski, C McCabe, ...
Science 345 (6202), 2014
1692014
Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots
HM Kang, C Ye, E Eskin
Genetics 180 (4), 1909-1925, 2008
1562008
Discovery of stimulation-responsive immune enhancers with CRISPR activation
DR Simeonov, BG Gowen, M Boontanrart, TL Roth, JD Gagnon, ...
Nature 549 (7670), 111, 2017
1252017
Parsing the interferon transcriptional network and its disease associations
S Mostafavi, H Yoshida, D Moodley, H LeBoité, K Rothamel, T Raj, CJ Ye, ...
Cell 164 (3), 564-578, 2016
1172016
Single-cell RNA sequencing of lymph node stromal cells reveals niche-associated heterogeneity
LB Rodda, E Lu, ML Bennett, CL Sokol, X Wang, SA Luther, BA Barres, ...
Immunity 48 (5), 1014-1028. e6, 2018
1152018
A tissue checkpoint regulates type 2 immunity
SJ Van Dyken, JC Nussbaum, J Lee, AB Molofsky, HE Liang, JL Pollack, ...
Nature Immunology 17 (12), 1381, 2016
1082016
Transethnic genetic-correlation estimates from summary statistics
BC Brown, CJ Ye, AL Price, N Zaitlen, ...
The American Journal of Human Genetics 99 (1), 76-88, 2016
832016
Effectively identifying eQTLs from multiple tissues by combining mixed model and meta-analytic approaches
JH Sul, B Han, C Ye, T Choi, E Eskin
PLoS Genet 9 (6), e1003491, 2013
832013
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
ATL Lun, S Riesenfeld, T Andrews, T Gomes, JC Marioni
Genome Biology 20 (1), 63, 2019
792019
Evaluation of SARS-CoV-2 serology assays reveals a range of test performance
JD Whitman, J Hiatt, CT Mowery, BR Shy, R Yu, TN Yamamoto, U Rathore, ...
Nature Biotechnology, 1-10, 2020
72*2020
Unleashing type-2 dendritic cells to drive protective antitumor CD4+ T cell immunity
M Binnewies, AM Mujal, JL Pollack, AJ Combes, EA Hardison, KC Barry, ...
Cell 177 (3), 556-571. e16, 2019
682019
Genetic determinants of co-accessible chromatin regions in activated T cells across humans
RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ...
Nature Genetics 50 (8), 1140, 2018
532018
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