Differentiation of human pluripotent stem cells into colonic organoids via transient activation of BMP signaling JO Múnera, N Sundaram, SA Rankin, D Hill, C Watson, M Mahe, ... Cell stem cell 21 (1), 51-64. e6, 2017 | 276 | 2017 |
Xenbase: a genomic, epigenomic and transcriptomic model organism database K Karimi, JD Fortriede, VS Lotay, KA Burns, DZ Wang, ME Fisher, TJ Pells, ... Nucleic acids research 46 (D1), D861-D868, 2018 | 211 | 2018 |
Esophageal organoids from human pluripotent stem cells delineate Sox2 functions during esophageal specification SL Trisno, KED Philo, KW McCracken, EM Catá, S Ruiz-Torres, ... Cell Stem Cell 23 (4), 501-515. e7, 2018 | 163 | 2018 |
Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis L Han, P Chaturvedi, K Kishimoto, H Koike, T Nasr, K Iwasawa, ... Nature communications 11 (1), 4158, 2020 | 162 | 2020 |
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database JD Fortriede, TJ Pells, S Chu, P Chaturvedi, DZ Wang, ME Fisher, ... Nucleic Acids Research 48 (D1), D776-D782, 2020 | 85 | 2020 |
Xenbase: Facilitating the Use of Xenopus to Model Human Disease MJ Nenni, ME Fisher, C James-Zorn, TJ Pells, V Ponferrada, S Chu, ... Frontiers in physiology 10, 154, 2019 | 83 | 2019 |
In vivo development of immune tissue in human intestinal organoids transplanted into humanized mice C Bouffi, KA Wikenheiser-Brokamp, P Chaturvedi, N Sundaram, ... Nature biotechnology 41 (6), 824-831, 2023 | 76 | 2023 |
En masse organoid phenotyping informs metabolic-associated genetic susceptibility to NASH M Kimura, T Iguchi, K Iwasawa, A Dunn, WL Thompson, Y Yoneyama, ... Cell 185 (22), 4216-4232. e16, 2022 | 71 | 2022 |
Xenbase: key features and resources of the Xenopus model organism knowledgebase M Fisher, C James-Zorn, V Ponferrada, AJ Bell, N Sundararaj, ... Genetics 224 (1), iyad018, 2023 | 59 | 2023 |
Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs ML Stevens, P Chaturvedi, SA Rankin, M Macdonald, S Jagannathan, ... Development 144 (7), 1283-1295, 2017 | 53 | 2017 |
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network S Mukherjee, P Chaturvedi, SA Rankin, MB Fish, M Wlizla, KD Paraiso, ... Elife 9, e58029, 2020 | 51 | 2020 |
Differential miRNA expression in cells and matrix vesicles in vascular smooth muscle cells from rats with kidney disease P Chaturvedi, NX Chen, K O’Neill, JN McClintick, SM Moe, SC Janga PLoS One 10 (6), e0131589, 2015 | 43 | 2015 |
ETS transcription factors Etv2 and Fli1b are required for tumor angiogenesis K Baltrunaite, MP Craig, S Palencia Desai, P Chaturvedi, RN Pandey, ... Angiogenesis 20, 307-323, 2017 | 37 | 2017 |
Identification of Osr2 transcriptional target genes in palate development X Fu, J Xu, P Chaturvedi, H Liu, R Jiang, Y Lan Journal of dental research 96 (12), 1451-1458, 2017 | 33 | 2017 |
Osr1 functions downstream of Hedgehog pathway to regulate foregut development L Han, J Xu, E Grigg, M Slack, P Chaturvedi, R Jiang, AM Zorn Developmental biology 427 (1), 72-83, 2017 | 32 | 2017 |
Glycosylphosphatidylinositol biosynthesis and remodeling are required for neural tube closure, heart development, and cranial neural crest cell survival M Lukacs, T Roberts, P Chatuverdi, RW Stottmann Elife 8, e45248, 2019 | 30 | 2019 |
Development of functional resident macrophages in human pluripotent stem cell-derived colonic organoids and human fetal colon JO Múnera, DO Kechele, C Bouffi, N Qu, R Jing, P Maity, JR Enriquez, ... Cell stem cell 30 (11), 1434-1451. e9, 2023 | 26 | 2023 |
Gli3 utilizes Hand2 to synergistically regulate tissue-specific transcriptional networks KH Elliott, X Chen, J Salomone, P Chaturvedi, PA Schultz, SK Balchand, ... Elife 9, e56450, 2020 | 26 | 2020 |
Tbx5 drives Aldh1a2 expression to regulate a RA-Hedgehog-Wnt gene regulatory network coordinating cardiopulmonary development SA Rankin, JD Steimle, XH Yang, AB Rydeen, K Agarwal, P Chaturvedi, ... Elife 10, e69288, 2021 | 24 | 2021 |
Disruption of a Hedgehog-Foxf1-Rspo2 signaling axis leads to tracheomalacia and a loss of Sox9+ tracheal chondrocytes T Nasr, AM Holderbaum, P Chaturvedi, K Agarwal, JL Kinney, K Daniels, ... Disease models & mechanisms 14 (2), dmm046573, 2021 | 22 | 2021 |