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Hongyi Zhou
Hongyi Zhou
Verified email at gatech.edu
Title
Cited by
Cited by
Year
Distance‐scaled, finite ideal‐gas reference state improves structure‐derived potentials of mean force for structure selection and stability prediction
H Zhou, Y Zhou
Protein science 11 (11), 2714-2726, 2002
10822002
GOAP: a generalized orientation-dependent, all-atom statistical potential for protein structure prediction
H Zhou, J Skolnick
Biophysical journal 101 (8), 2043-2052, 2011
3092011
Fold recognition by combining sequence profiles derived from evolution and from depth‐dependent structural alignment of fragments
H Zhou, Y Zhou
Proteins: Structure, Function, and Bioinformatics 58 (2), 321-328, 2005
2752005
Single‐body residue‐level knowledge‐based energy score combined with sequence‐profile and secondary structure information for fold recognition
H Zhou, Y Zhou
Proteins: Structure, Function, and Bioinformatics 55 (4), 1005-1013, 2004
2222004
Folding rate prediction using total contact distance
H Zhou, Y Zhou
Biophysical Journal 82 (1), 458-463, 2002
2192002
A physical reference state unifies the structure‐derived potential of mean force for protein folding and binding
S Liu, C Zhang, H Zhou, Y Zhou
Proteins: Structure, Function, and Bioinformatics 56 (1), 93-101, 2004
2152004
An accurate, residue‐level, pair potential of mean force for folding and binding based on the distance‐scaled, ideal‐gas reference state
C Zhang, S Liu, H Zhou, Y Zhou
Protein Science 13 (2), 400-411, 2004
1732004
Quantifying the effect of burial of amino acid residues on protein stability
H Zhou, Y Zhou
PROTEINS: Structure, Function, and Bioinformatics 54 (2), 315-322, 2004
1522004
AlphaFold 2: why it works and its implications for understanding the relationships of protein sequence, structure, and function
J Skolnick, M Gao, H Zhou, S Singh
Journal of chemical information and modeling 61 (10), 4827-4831, 2021
1442021
Comprehensive prediction of drug-protein interactions and side effects for the human proteome
H Zhou, M Gao, J Skolnick
Scientific reports 5 (1), 11090, 2015
1272015
SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures
H Zhou, Y Zhou
Bioinformatics 21 (18), 3615-3621, 2005
1262005
Insights into disease-associated mutations in the human proteome through protein structural analysis
M Gao, H Zhou, J Skolnick
Structure 23 (7), 1362-1369, 2015
1142015
Performance of the AM1, PM3, and SCC-DFTB methods in the study of conjugated Schiff base molecules
H Zhou, E Tajkhorshid, T Frauenheim, S Suhai, M Elstner
Chemical Physics 277 (2), 91-103, 2002
1092002
Ab initio protein structure prediction using chunk-TASSER
H Zhou, J Skolnick
Biophysical journal 93 (5), 1510-1518, 2007
1042007
Predicting the topology of transmembrane helical proteins using mean burial propensity and a hidden‐Markov‐model‐based method
H Zhou, Y Zhou
Protein Science 12 (7), 1547-1555, 2003
962003
Stability scale and atomic solvation parameters extracted from 1023 mutation experiments
H Zhou, Y Zhou
Proteins: Structure, Function, and Bioinformatics 49 (4), 483-492, 2002
872002
SPARKS 2 and SP3 servers in CASP6
H Zhou, Y Zhou
Proteins: Structure, Function, and Bioinformatics 61 (S7), 152-156, 2005
862005
Analysis of TASSER‐based CASP7 protein structure prediction results
H Zhou, SB Pandit, SY Lee, J Borreguero, H Chen, L Wroblewska, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 90-97, 2007
852007
Coupled-channel effects in hadronic transitions in heavy-quarkonium systems
HY Zhou, YP Kuang
Physical Review D 44 (3), 756, 1991
841991
Protein structure prediction by pro-Sp3-TASSER
H Zhou, J Skolnick
Biophysical journal 96 (6), 2119-2127, 2009
792009
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Articles 1–20