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Pengfei Dong
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3D chromatin architecture of large plant genomes determined by local A/B compartments
P Dong, X Tu, PY Chu, P Lü, N Zhu, D Grierson, B Du, P Li, S Zhong
Molecular plant 10 (12), 1497-1509, 2017
2572017
The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling
C Peng, LY Fu, PF Dong, ZL Deng, JX Li, XT Wang, HY Zhang
Nucleic acids research 41 (19), e183-e183, 2013
682013
Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains
P Dong, X Tu, H Li, J Zhang, D Grierson, P Li, S Zhong
Journal of Integrative Plant Biology 62 (2), 201-217, 2020
632020
Genetics of the human microglia regulome refines Alzheimer’s disease risk loci
R Kosoy, JF Fullard, B Zeng, J Bendl, P Dong, S Rahman, SP Kleopoulos, ...
Nature genetics 54 (8), 1145-1154, 2022
562022
The three-dimensional landscape of cortical chromatin accessibility in Alzheimer’s disease
J Bendl, ME Hauberg, K Girdhar, E Im, JM Vicari, S Rahman, ...
Nature neuroscience 25 (10), 1366-1378, 2022
332022
Chromatin domain alterations linked to 3D genome organization in a large cohort of schizophrenia and bipolar disorder brains
K Girdhar, GE Hoffman, J Bendl, S Rahman, P Dong, W Liao, ...
Nature neuroscience 25 (4), 474-483, 2022
332022
Plant and animal chromatin three-dimensional organization: similar structures but different functions
P Dong, X Tu, Z Liang, BH Kang, S Zhong
Journal of Experimental Botany 71 (17), 5119-5128, 2020
302020
Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes
XT Wang, PF Dong, HY Zhang, C Peng
Nucleic acids research 43 (15), 7237-7246, 2015
242015
Population-level variation in enhancer expression identifies disease mechanisms in the human brain
P Dong, GE Hoffman, P Apontes, J Bendl, S Rahman, MB Fernando, ...
Nature Genetics 54 (10), 1493-1503, 2022
202022
Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize
X Dai, X Tu, B Du, P Dong, S Sun, X Wang, J Sun, G Li, T Lu, S Zhong, ...
The Plant Journal 109 (3), 675-692, 2022
162022
ATP selection in a random peptide library consisting of prebiotic amino acids
SK Kang, BX Chen, T Tian, XS Jia, XY Chu, R Liu, PF Dong, QY Yang, ...
Biochemical and Biophysical Research Communications 466 (3), 400-405, 2015
142015
A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology
B Ranawaka, J An, MT Lorenc, H Jung, M Sulli, G Aprea, S Roden, ...
Nature Plants 9 (9), 1558-1571, 2023
132023
The neuroepigenome: implications of chemical and physical modifications of genomic DNA in schizophrenia
K Girdhar, S Rahman, P Dong, JF Fullard, P Roussos
Biological Psychiatry 92 (6), 443-449, 2022
72022
Genome-wide analysis of a model-derived binge eating disorder phenotype identifies risk loci and implicates iron metabolism
D Burstein, TC Griffen, K Therrien, J Bendl, S Venkatesh, P Dong, ...
Nature Genetics 55 (9), 1462-1470, 2023
52023
Low temperature-induced regulatory network rewiring via WRKY regulators during banana peel browning
W Zhu, H Li, P Dong, X Ni, M Fan, Y Yang, S Xu, Y Xu, Y Qian, Z Chen, ...
Plant Physiology 193 (1), 855-873, 2023
42023
Genome-wide analysis of binge-eating disorder identifies the first three risk loci and implicates iron metabolism
D Burstein, T Griffen, K Therrien, J Bendl, S Venkatesh, P Dong, ...
medRxiv, 2022.04. 28.22274437, 2022
42022
From compartments to gene loops: Functions of the 3D genome in the human brain
S Rahman, P Dong, P Apontes, MB Fernando, KG Townsley, K Girdhar, ...
BioRxiv, 2021.10. 12.464094, 2021
42021
Population-level variation of enhancer expression identifies novel disease mechanisms in the human brain
P Dong, GE Hoffman, P Apontes, J Bendl, S Rahman, MB Fernando, ...
42021
Lineage specific 3D genome structure in the adult human brain and neurodevelopmental changes in the chromatin interactome
S Rahman, P Dong, P Apontes, MB Fernando, R Kosoy, KG Townsley, ...
Nucleic Acids Research 51 (20), 11142-11161, 2023
22023
Transcriptome and chromatin accessibility landscapes across 25 distinct human brain regions expand the susceptibility gene set for neuropsychiatric disorders
P Dong, J Bendl, R Misir, Z Shao, J Edelstien, DA Davis, V Haroutunian, ...
BioRxiv, 2022.09. 02.506419, 2022
22022
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