| Harmonization of cortical thickness measurements across scanners and sites JP Fortin, N Cullen, YI Sheline, WD Taylor, I Aselcioglu, PA Cook, ... NeuroImage 167, 104-120, 2018 | 1126 | 2018 |
| Harmonization of multi-site diffusion tensor imaging data JP Fortin, D Parker, B Tunç, T Watanabe, MA Elliott, K Ruparel, DR Roalf, ... Neuroimage 161, 149-170, 2017 | 1019 | 2017 |
| Functional normalization of 450k methylation array data improves replication in large cancer studies JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ... Genome biology 15 (11), 503, 2014 | 874 | 2014 |
| Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi JP Fortin, TJ Triche Jr, KD Hansen Bioinformatics 33 (4), 558-560, 2017 | 758 | 2017 |
| Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data JP Fortin, KD Hansen Genome biology 16, 1-23, 2015 | 333 | 2015 |
| Removing inter-subject technical variability in magnetic resonance imaging studies JP Fortin, EM Sweeney, J Muschelli, CM Crainiceanu, RT Shinohara, ... NeuroImage 132, 198-212, 2016 | 155 | 2016 |
| Integrated digital pathology and transcriptome analysis identifies molecular mediators of T-cell exclusion in ovarian cancer M Desbois, AR Udyavar, L Ryner, C Kozlowski, Y Guan, M Dürrbaum, ... Nature communications 11 (1), 5583, 2020 | 150 | 2020 |
| Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ... Genome Biology 17 (1), 266, 2016 | 126 | 2016 |
| shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R JP Fortin, E Fertig, K Hansen F1000Research 3, 2014 | 114 | 2014 |
| Neuroconductor: an R platform for medical imaging analysis J Muschelli, A Gherman, JP Fortin, B Avants, B Whitcher, JD Clayden, ... Biostatistics 20 (2), 218-239, 2019 | 55 | 2019 |
| A comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs across nucleases and technologies L Hoberecht, P Perampalam, A Lun, JP Fortin Nature Communications 13 (1), 6568, 2022 | 37 | 2022 |
| Multiple-gene targeting and mismatch tolerance can confound analysis of genome-wide pooled CRISPR screens JP Fortin, J Tan, KE Gascoigne, PM Haverty, WF Forrest, MR Costa, ... Genome biology 20, 1-25, 2019 | 37 | 2019 |
| funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types K Oros Klein, S Grinek, S Bernatsky, L Bouchard, A Ciampi, I Colmegna, ... Bioinformatics 32 (4), 593-595, 2016 | 25 | 2016 |
| A saturation mutagenesis screen uncovers resistant and sensitizing secondary KRAS mutations to clinical KRASG12C inhibitors S Feng, MG Callow, JP Fortin, Z Khan, D Bray, M Costa, Z Shi, W Wang, ... Proceedings of the National Academy of Sciences 119 (18), e2120512119, 2022 | 22 | 2022 |
| Anti-α-synuclein c-terminal antibodies block PFF uptake and accumulation of phospho-synuclein in preclinical models of Parkinson's disease R Brendza, X Gao, KL Stark, H Lin, SH Lee, C Hu, H Cai, D DiCara, ... Neurobiology of Disease 177, 105969, 2023 | 11 | 2023 |
| The Genome-Wide Molecular Landscape of HPV-Driven and HPV-Negative Head and Neck Squamous Cell Carcinoma F Faraji, AD Schubert, LT Kagohara, M Tan, Y Xu, M Zaidi, JP Fortin, ... Molecular Determinants of Head and Neck Cancer, 293-325, 2018 | 6 | 2018 |
| Asymptotic eigenvalue distribution of random lifts JP Fortin, S Rudinsky The Waterloo Mathematics Review 2 (2), 1-10, 2012 | 5 | 2012 |
| CRISPR activation screens identify the SWI/SNF ATPases as suppressors of ferroptosis KP Bhat, J Vijay, CK Vilas, J Asundi, J Zou, T Lau, X Cai, M Ahmed, ... Cell Reports 43 (6), 2024 | 2 | 2024 |
| Accelerated drug-resistant variant discovery with an enhanced, scalable mutagenic base editor platform KM Dorighi, A Zhu, JP Fortin, JHH Lo, J Sudhamsu, TJ Wendorff, ... Cell Reports 43 (6), 2024 | 1 | 2024 |
| Compartmap enables inference of higher-order chromatin structure in individual cells from scRNA-seq and scATAC-seq BK Johnson, JP Fortin, KD Hansen, H Shen, T Triche Jr bioRxiv, 2021.05. 17.444465, 2021 | 1 | 2021 |
Russell ShinoharaProfessor at the University of PennsylvaniaVerified email at pennmedicine.upenn.edu
