Jean-Philippe Fortin
Jean-Philippe Fortin
Scientist (Bioinformatics), gRED, Genentech
Verified email at
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Functional normalization of 450k methylation array data improves replication in large cancer studies
JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ...
Genome biology 15 (11), 1-17, 2014
Harmonization of multi-site diffusion tensor imaging data
JP Fortin, D Parker, B Tunç, T Watanabe, MA Elliott, K Ruparel, DR Roalf, ...
Neuroimage 161, 149-170, 2017
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi
JP Fortin, TJ Triche Jr, KD Hansen
Bioinformatics 33 (4), 558-560, 2017
Harmonization of cortical thickness measurements across scanners and sites
JP Fortin, N Cullen, YI Sheline, WD Taylor, I Aselcioglu, PA Cook, ...
NeuroImage 167, 104-120, 2018
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
JP Fortin, KD Hansen
Genome biology 16 (1), 1-23, 2015
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ...
Genome Biology 17 (1), 266, 2016
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
JP Fortin, E Fertig, K Hansen
F1000Research 3, 2014
Removing inter-subject technical variability in magnetic resonance imaging studies
JP Fortin, EM Sweeney, J Muschelli, CM Crainiceanu, RT Shinohara, ...
NeuroImage 132, 198-212, 2016
Neuroconductor: an R platform for medical imaging analysis
J Muschelli, A Gherman, JP Fortin, B Avants, B Whitcher, JD Clayden, ...
Biostatistics 20 (2), 218-239, 2019
Multiple-gene targeting and mismatch tolerance can confound analysis of genome-wide pooled CRISPR screens
JP Fortin, J Tan, KE Gascoigne, PM Haverty, WF Forrest, MR Costa, ...
Genome biology 20 (1), 1-25, 2019
funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types
K Oros Klein, S Grinek, S Bernatsky, L Bouchard, A Ciampi, I Colmegna, ...
Bioinformatics 32 (4), 593-595, 2016
Asymptotic eigenvalue distribution of random lifts
JP Fortin, S Rudinsky
The Waterloo Mathematics Review 2 (2), 1-10, 2012
Integrated digital pathology and transcriptome analysis identifies molecular mediators of T-cell exclusion in ovarian cancer
M Desbois, AR Udyavar, L Ryner, C Kozlowski, Y Guan, M Dürrbaum, ...
Nature Communications 11 (1), 1-14, 2020
The Genome-Wide Molecular Landscape of HPV-Driven and HPV-Negative Head and Neck Squamous Cell Carcinoma
F Faraji, AD Schubert, LT Kagohara, M Tan, Y Xu, M Zaidi, JP Fortin, ...
Molecular Determinants of Head and Neck Cancer, 293-325, 2018
Minfi tutorial BioC2014
JPFKD Hansen
Statistical methods for epigenetic data and structural magnetic resonance imaging
JP Fortin
Johns Hopkins University, 2016
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