Jean-Philippe Fortin
Jean-Philippe Fortin
Scientist (Bioinformatics), gRED, Genentech
Verified email at gene.com
Title
Cited by
Cited by
Year
Functional normalization of 450k methylation array data improves replication in large cancer studies
JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ...
Genome biology 15 (11), 1-17, 2014
4772014
Harmonization of multi-site diffusion tensor imaging data
JP Fortin, D Parker, B Tunç, T Watanabe, MA Elliott, K Ruparel, DR Roalf, ...
Neuroimage 161, 149-170, 2017
2432017
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi
JP Fortin, TJ Triche Jr, KD Hansen
Bioinformatics 33 (4), 558-560, 2017
2422017
Harmonization of cortical thickness measurements across scanners and sites
JP Fortin, N Cullen, YI Sheline, WD Taylor, I Aselcioglu, PA Cook, ...
NeuroImage 167, 104-120, 2018
2032018
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
JP Fortin, KD Hansen
Genome biology 16 (1), 1-23, 2015
1672015
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ...
Genome Biology 17 (1), 266, 2016
742016
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
JP Fortin, E Fertig, K Hansen
F1000Research 3, 2014
572014
Removing inter-subject technical variability in magnetic resonance imaging studies
JP Fortin, EM Sweeney, J Muschelli, CM Crainiceanu, RT Shinohara, ...
NeuroImage 132, 198-212, 2016
512016
Neuroconductor: an R platform for medical imaging analysis
J Muschelli, A Gherman, JP Fortin, B Avants, B Whitcher, JD Clayden, ...
Biostatistics 20 (2), 218-239, 2019
292019
Multiple-gene targeting and mismatch tolerance can confound analysis of genome-wide pooled CRISPR screens
JP Fortin, J Tan, KE Gascoigne, PM Haverty, WF Forrest, MR Costa, ...
Genome biology 20 (1), 1-25, 2019
242019
funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types
K Oros Klein, S Grinek, S Bernatsky, L Bouchard, A Ciampi, I Colmegna, ...
Bioinformatics 32 (4), 593-595, 2016
132016
Asymptotic eigenvalue distribution of random lifts
JP Fortin, S Rudinsky
The Waterloo Mathematics Review 2 (2), 1-10, 2012
42012
Integrated digital pathology and transcriptome analysis identifies molecular mediators of T-cell exclusion in ovarian cancer
M Desbois, AR Udyavar, L Ryner, C Kozlowski, Y Guan, M Dürrbaum, ...
Nature Communications 11 (1), 1-14, 2020
32020
The Genome-Wide Molecular Landscape of HPV-Driven and HPV-Negative Head and Neck Squamous Cell Carcinoma
F Faraji, AD Schubert, LT Kagohara, M Tan, Y Xu, M Zaidi, JP Fortin, ...
Molecular Determinants of Head and Neck Cancer, 293-325, 2018
22018
Minfi tutorial BioC2014
JPFKD Hansen
12014
Statistical methods for epigenetic data and structural magnetic resonance imaging
JP Fortin
Johns Hopkins University, 2016
2016
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Articles 1–16