Ines Thiele

Cited by

	All	Since 2016
Citations	20129	12091
h-index	52	45
i10-index	90	86

2600

1300

650

1950

200620072008200920102011201220132014201520162017201820192020202186 158 226 394 610 746 1132 1343 1549 1600 1569 1846 2067 2254 2546 1779

Public access

View all

57 articles

2 articles

available

not available

Based on funding mandates

Co-authors

Bernhard PalssonUCSDVerified email at eng.ucsd.edu
Ronan M.T. FlemingSenior Lecturer, National University of Ireland, Galway, & Asst. Professor, Leiden UniversityVerified email at lacdr.leidenuniv.nl
Almut HeinkenNational University of Ireland, GalwayVerified email at nuigalway.ie
Stefania MagnusdottirPhD Student, University of LuxembourgVerified email at uni.lu
Adam FeistUCSD / DTUVerified email at ucsd.edu
Nathan E LewisAssociate Professor, University of California, San DiegoVerified email at ucsd.edu
Nathan D. PriceCEO Onegevity; Professor, ISBVerified email at systemsbiology.org
Thomas HankemeierProfessor of Analytical Biosciences, Leiden UniversityVerified email at lacdr.leidenuniv.nl
Gabi KastenmüllerHelmholtz Zentrum München - German Research Center for Environmental HealthVerified email at helmholtz-muenchen.de
Markus HerrgardCTO, BioInnovation InstituteVerified email at novo.dk
Karen P. ScottSenior Research Fellow, Rowett Institute of Nutrition and Health, University of AberdeenVerified email at abdn.ac.uk
Marta CascanteUniversitat de BarcelonaVerified email at ub.edu
Warwick DunnUniversity of Birmingham, UKVerified email at bham.ac.uk
David WishartProfessor, Depts. of Computing Science and Biological Sciences - University of AlbertaVerified email at ualberta.ca
Matej OrešičProfessor of Medical Sciences (Systems Medicine), Örebro University & Turku Bioscience CentreVerified email at oru.se
Lorraine BrennanUCDVerified email at ucd.ie
Oliver FiehnUC DavisVerified email at ucdavis.edu
Michael SaundersProfessor of Operations Research, Stanford UniversityVerified email at stanford.edu
Heinz P. NasheuerProfessor, Dr. rer. nat., NUI Galway, Biochemistry - School of Natural SciencesVerified email at nuigalway.ie
Valerie de Crecy-LagardMicrobiology and Cell Science, University of FloridaVerified email at ufl.edu

Ines Thiele

National University of Ireland, Galway

Verified email at nuigalway.ie

constraint-based modeling multiscale modeling human metabolism gut microbiome gut-brain-axis


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
What is flux balance analysis? JD Orth, I Thiele, BØ Palsson Nature biotechnology 28 (3), 245-248, 2010	2990	2010
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005	1953	2005
A protocol for generating a high-quality genome-scale metabolic reconstruction I Thiele, BØ Palsson Nature protocols 5 (1), 93-121, 2010	1519	2010
Global reconstruction of the human metabolic network based on genomic and bibliomic data NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ... Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007	1456	2007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature protocols 6 (9), 1290-1307, 2011	1449	2011
Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009	990	2009
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	986	2013
Gut microbiota functions: metabolism of nutrients and other food components I Rowland, G Gibson, A Heinken, K Scott, J Swann, I Thiele, K Tuohy European journal of nutrition 57 (1), 1-24, 2018	845	2018
Towards multidimensional genome annotation JL Reed, I Famili, I Thiele, BO Palsson Nature Reviews Genetics 7 (2), 130-141, 2006	428	2006
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019	390	2019
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ... Nature biotechnology 35 (1), 81-89, 2017	382	2017
Metabolomics enables precision medicine:“a white paper, community perspective” RD Beger, W Dunn, MA Schmidt, SS Gross, JA Kirwan, M Cascante, ... Metabolomics 12 (9), 1-15, 2016	343*	2016
Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes S Magnúsdóttir, D Ravcheev, V de Crécy-Lagard, I Thiele Frontiers in genetics 6, 148, 2015	326	2015
Computationally efficient flux variability analysis S Gudmundsson, I Thiele BMC bioinformatics 11 (1), 1-3, 2010	289	2010
Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis J Nogales, S Gudmundsson, EM Knight, BO Palsson, I Thiele Proceedings of the National Academy of Sciences 109 (7), 2678-2683, 2012	288	2012
Expanded Metabolic Reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an In Silico Genome-Scale Characterization of Single- and Double-Deletion Mutants I Thiele, TD Vo, ND Price, BØ Palsson Journal of bacteriology 187 (16), 5818-5830, 2005	278	2005
Recon3D enables a three-dimensional view of gene variation in human metabolism E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ... Nature biotechnology 36 (3), 272-281, 2018	270	2018
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory J Nogales, B Palsson, I Thiele BMC systems biology 2 (1), 79, 2008	265	2008
Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its … I Thiele, N Jamshidi, RMT Fleming, BØ Palsson PLoS computational biology 5 (3), e1000312, 2009	217	2009
Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut A Heinken, S Sahoo, RMT Fleming, I Thiele Gut microbes 4 (1), 28-40, 2013	201	2013

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow this author

Cited by

Co-authors