Ines Thiele
Title
Cited by
Cited by
Year
What is flux balance analysis?
JD Orth, I Thiele, BØ Palsson
Nature biotechnology 28 (3), 245-248, 2010
25642010
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
17892005
Global reconstruction of the human metabolic network based on genomic and bibliomic data
NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ...
Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007
13562007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature protocols 6 (9), 1290, 2011
13352011
A protocol for generating a high-quality genome-scale metabolic reconstruction
I Thiele, BØ Palsson
Nature protocols 5 (1), 93, 2010
13102010
Reconstruction of biochemical networks in microorganisms
AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson
Nature Reviews Microbiology 7 (2), 129-143, 2009
9332009
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
9032013
Gut microbiota functions: metabolism of nutrients and other food components
I Rowland, G Gibson, A Heinken, K Scott, J Swann, I Thiele, K Tuohy
European journal of nutrition 57 (1), 1-24, 2018
4302018
Towards multidimensional genome annotation
JL Reed, I Famili, I Thiele, BO Palsson
Nature Reviews Genetics 7 (2), 130-141, 2006
4122006
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ...
Nature biotechnology 35 (1), 81, 2017
2762017
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single-and double-deletion mutants
I Thiele, TD Vo, ND Price, BØ Palsson
Journal of bacteriology 187 (16), 5818-5830, 2005
2672005
Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
J Nogales, S Gudmundsson, EM Knight, BO Palsson, I Thiele
Proceedings of the National Academy of Sciences 109 (7), 2678-2683, 2012
2632012
Metabolomics enables precision medicine:“a white paper, community perspective”
RD Beger, W Dunn, MA Schmidt, SS Gross, JA Kirwan, M Cascante, ...
Metabolomics 12 (9), 149, 2016
2592016
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory
J Nogales, B Palsson, I Thiele
BMC systems biology 2 (1), 79, 2008
2382008
Computationally efficient flux variability analysis
S Gudmundsson, I Thiele
BMC bioinformatics 11 (1), 489, 2010
2262010
Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
S Magnúsdóttir, D Ravcheev, V de Crécy-Lagard, I Thiele
Frontiers in genetics 6, 148, 2015
2182015
Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization
I Thiele, N Jamshidi, RMT Fleming, BØ Palsson
PLoS Comput Biol 5 (3), e1000312, 2009
1972009
Three-dimensional structural view of the central metabolic network of Thermotoga maritima
Y Zhang, I Thiele, D Weekes, Z Li, L Jaroszewski, K Ginalski, AM Deacon, ...
Science 325 (5947), 1544-1549, 2009
1772009
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
1752019
Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut
A Heinken, S Sahoo, RMT Fleming, I Thiele
Gut microbes 4 (1), 28-40, 2013
1742013
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