Federico Marini
Federico Marini
Research Fellow, Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI)
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Genetic cell ablation reveals clusters of local self-renewing microglia in the mammalian central nervous system
J Bruttger, K Karram, S Wörtge, T Regen, F Marini, N Hoppmann, M Klein, ...
Immunity 43 (1), 92-106, 2015
Orchestrating single-cell analysis with Bioconductor
RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ...
Nature methods 17 (2), 137-145, 2019
pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
F Marini, H Binder
BMC Bioinformatics 20 (1), 331, 2019
Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19
B Krämer, R Knoll, L Bonaguro, M ToVinh, J Raabe, ...
Immunity 54 (11), 2650-2669. e14, 2021
Transcriptome 3′ end organization by PCF11 links alternative polyadenylation to formation and neuronal differentiation of neuroblastoma
A Ogorodnikov, M Levin, S Tattikota, S Tokalov, M Hoque, D Scherzinger, ...
Nature communications 9 (1), 5331, 2018
IL-17+ CD8+ T cell suppression by dimethyl fumarate associates with clinical response in multiple sclerosis
C Lückel, F Picard, H Raifer, LC Carrascosa, A Guralnik, Y Zhang, M Klein, ...
Nature Communications 10 (1), 1-15, 2019
Myeloid cell-synthesized coagulation Factor X dampens anti-tumor immunity
C Graf, P Wilgenbus, S Pagel, J Pott, F Marini, S Reyda, M Kitano, ...
Science Immunology 4 (39), eaaw8405, 2019
Bacterial polyphosphates interfere with the innate host defense to infection
J Roewe, G Stavrides, M Strueve, A Sharma, F Marini, A Mann, SA Smith, ...
Nature Communications 11 (1), 1-12, 2020
iSEE: Interactive SummarizedExperiment Explorer
K Rue-Albrecht, F Marini, C Soneson, ATL Lun
F1000Research 7, 2018
Integrated longitudinal immunophenotypic, transcriptional and repertoire analyses delineate immune responses in COVID-19 patients
S Notarbartolo, V Ranzani, A Bandera, P Gruarin, V Bevilacqua, ...
Science Immunology 6 (62), 2021
Interleukin-1 promotes autoimmune neuroinflammation by suppressing endothelial heme oxygenase-1 at the blood–brain barrier
J Hauptmann, L Johann, F Marini, M Kitic, E Colombo, IA Mufazalov, ...
Acta Neuropathologica 140 (4), 549-567, 2020
Reciprocal regulation of the Il9 locus by counteracting activities of transcription factors IRF1 and IRF4
LC Carrascosa, M Klein, Y Kitagawa, C Lückel, F Marini, A König, ...
Nature Communications 8, 15366, 2017
A Trans-Specific Polymorphism in ZC3HAV1 Is Maintained by Long-Standing Balancing Selection and May Confer Susceptibility to Multiple Sclerosis
R Cagliani, FR Guerini, M Fumagalli, S Riva, C Agliardi, D Galimberti, ...
Molecular biology and evolution 29 (6), 1599-1613, 2012
Promoter-proximal pausing mediated by the exon junction complex regulates splicing
J Akhtar, N Kreim, F Marini, G Mohana, D Brüne, H Binder, JY Roignant
Nature communications 10 (1), 521, 2019
Genotoxicity testing: Comparison of the γH2AX focus assay with the alkaline and neutral comet assays
T Nikolova, F Marini, B Kaina
Mutation Research/Genetic Toxicology and Environmental Mutagenesis 822, 10-18, 2017
Targeting prohibitins with chemical ligands inhibits KRAS-mediated lung tumours
H Yurugi, F Marini, C Weber, K David, Q Zhao, H Binder, L Désaubry, ...
Oncogene 36 (33), 4778-4789, 2017
Systematically evaluating interfaces for RNA-seq analysis from a life scientist perspective
A Poplawski, F Marini, M Hess, T Zeller, J Mazur, H Binder
Briefings in Bioinformatics 17 (2), 213-223, 2016
Microglial A20 Protects the Brain from CD8 T-Cell-Mediated Immunopathology
AN Mohebiany, NS Ramphal, K Karram, G Di Liberto, T Novkovic, M Klein, ...
Cell Reports 30 (5), 1585-1597. e6, 2020
TREND-DB—a transcriptome-wide atlas of the dynamic landscape of alternative polyadenylation
F Marini, D Scherzinger, S Danckwardt
Nucleic Acids Research 49 (D1), D243-D253, 2021
Evaluation of the apparent diffusion coefficient in patients with recurrent glioblastoma under treatment with bevacizumab with radiographic pseudoresponse
TA Auer, HC Breit, F Marini, M Renovanz, F Ringel, CJ Sommer, ...
Journal of Neuroradiology 46 (1), 36-43, 2019
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Articles 1–20