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Dheeraj Kumar Sarkar
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TransportTools: a library for high-throughput analyses of internal voids in biomolecules and ligand transport through them
J Brezovsky, AS Thirunavukarasu, B Surpeta, CE Sequeiros-Borja, ...
Bioinformatics 38 (6), 1752-1753, 2022
92022
Nano-structured Hydrotrope-Caged Cytochrome c with Boosted Stability in Harsh Environments: A Molecular Insight
P Bharadwaj, DK Sarkar, M Bisht, SM Shet, NS Kotrappanavar, V Lokesh, ...
Green Chemistry 25 (17), 6666-6676, 2023
12023
Suitability of Adenosine Derivatives in Improving the Activity and Stability of Cytochrome c under Stress: Insights into the Effect of Phosphate Groups
P Bharadwaj, SM Shet, M Bisht, DK Sarkar, G Franklin, ...
The Journal of Physical Chemistry B 128 (1), 86-95, 2023
2023
Atomic visualization of flipped‐back conformations of high mannose glycans interacting with cargo lectins: An MD simulation perspective
NG Jayaprakash, DK Sarkar, A Surolia
Proteins: Structure, Function, and Bioinformatics, 2023
2023
Incorporating prior knowledge to seeds of adaptive sampling molecular dynamics simulations of ligand transport in enzymes with buried active sites
DK Sarkar, B Surpeta, J Brezovsky
bioRxiv, 2023.09. 21.558608, 2023
2023
Analysis of substrate exchange between bulk solvent and buried enzyme active site via multiple molecular tunnels using high-throughput simulations
JB DK Sarkar
45th FEBS Congress, Molecules of Life: Toward New Horizons, Ljubljana …, 2021
2021
Molecular dynamics simulations on the binding of N-acetyl ornithine to ArgJ of Mycobacterium tuberculosis in the presence of ANS inhibitor
DK Sarkar
VIT University, Vellore, 2017
2017
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