Tuan Trieu
Tuan Trieu
Weill Cornell Medicine
Verified email at med.cornell.edu
Title
Cited by
Cited by
Year
Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data
T Trieu, J Cheng
Nucleic acids research 42 (7), e52-e52, 2014
872014
MOGEN: a tool for reconstructing 3D models of genomes from chromosomal conformation capturing data
T Trieu, J Cheng
Bioinformatics 32 (9), 1286-1292, 2016
432016
3D genome structure modeling by Lorentzian objective function
T Trieu, J Cheng
Nucleic acids research 45 (3), 1049-1058, 2017
392017
Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing
B Adhikari, T Trieu, J Cheng
BMC genomics 17 (1), 1-9, 2016
382016
GMOL: an interactive tool for 3D genome structure visualization
J Nowotny, A Wells, L Xu, R Cao, T Trieu, C He, J Cheng
Scientific Reports, 2015
272015
Spatial genome re-organization between fetal and adult hematopoietic stem cells
C Chen, W Yu, J Tober, P Gao, B He, K Lee, T Trieu, GA Blobel, NA Speck, ...
Cell reports 29 (12), 4200-4211. e7, 2019
202019
Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data
J Nowotny, S Ahmed, L Xu, O Oluwadare, H Chen, N Hensley, T Trieu, ...
BMC bioinformatics 16 (1), 1-19, 2015
182015
GenomeFlow: a comprehensive graphical tool for modeling and analyzing 3D genome structure
T Trieu, O Oluwadare, J Wopata, J Cheng
Bioinformatics 35 (8), 1416-1418, 2019
132019
An improvement for dEclat algorithm
TA Trieu, Y Kunieda
Proceedings of the 6th International Conference on Ubiquitous Information …, 2012
122012
Hierarchical reconstruction of high-resolution 3D models of large chromosomes
T Trieu, O Oluwadare, J Cheng
Scientific reports 9 (1), 1-12, 2019
102019
DeepMILO: a deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure
T Trieu, A Martinez-Fundichely, E Khurana
Genome biology 21 (1), 1-11, 2020
82020
Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway
J Carrot-Zhang, X Yao, S Devarakonda, A Deshpande, JS Damrauer, ...
Cell reports 34 (5), 108707, 2021
42021
Developmental chromatin programs determine oncogenic competence in melanoma
A Baggiolini, SJ Callahan, T Trieu, MM Tagore, E Montal, JM Weiss, ...
bioRxiv, 2020
22020
A deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure
T Trieu, E Khurana
bioRxiv, 516849, 2019
12019
Predicting the impact of somatic mutations on chromatin conformation using deep learning
T Trieu, E Khurana
Cancer Research 79 (13 Supplement), 2443-2443, 2019
2019
Hierarchical Reconstruction of High-Resolution 3D Models of Human Chromosomes
T Trieu, O Oluwadare, J Cheng
bioRxiv, 415810, 2018
2018
3D genome structure reconstruction from chromosomal contact data
TA Trieu
University of Missouri--Columbia, 2017
2017
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Articles 1–17