Donghyuk Kim
Donghyuk Kim
Associate Professor, School of Energy and Chemical Engineering, UNIST
Verified email at - Homepage
Cited by
Cited by
Functional links between clustered microRNAs: suppression of cell-cycle inhibitors by microRNA clusters in gastric cancer
YK Kim, J Yu, TS Han, SY Park, B Namkoong, DH Kim, K Hur, MW Yoo, ...
Nucleic acids research 37 (5), 1672-1681, 2009
Network context and selection in the evolution to enzyme specificity
H Nam, NE Lewis, JA Lerman, DH Lee, RL Chang, D Kim, BO Palsson
Science 337 (6098), 1101-1104, 2012
Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli
SW Seo, D Kim, H Latif, EJ O’Brien, R Szubin, BO Palsson
Nature Communications 5, 2014
Multi-omic data integration enables discovery of hidden biological regularities
A Ebrahim, E Brunk, J Tan, EJ O'brien, D Kim, R Szubin, JA Lerman, ...
Nature communications 7 (1), 1-9, 2016
Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli
RL Chang, K Andrews, D Kim, Z Li, A Godzik, BO Palsson
Science 340 (6137), 1220-1223, 2013
Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling
D Kim, JSJ Hong, Y Qiu, H Nagarajan, JH Seo, BK Cho, SF Tsai, ...
PLoS Genet 8 (8), e1002867, 2012
Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655
SW Seo, D Kim, R Szubin, BO Palsson
Cell Reports 12 (8), 1289-1299, 2015
Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
BK Cho, D Kim, EM Knight, K Zengler, BO Palsson
BMC biology 12 (1), 1, 2014
The PurR regulon in Escherichia coli K-12 MG1655
BK Cho, SA Federowicz, M Embree, YS Park, D Kim, BØ Palsson
Nucleic acids research 39 (15), 6456-6464, 2011
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities
X Fang, A Sastry, N Mih, D Kim, J Tan, JT Yurkovich, CJ Lloyd, Y Gao, ...
Proceedings of the National Academy of Sciences 114 (38), 10286-10291, 2017
Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli
SW Seo, D Kim, EJ O’Brien, R Szubin, BO Palsson
Nature communications 6 (1), 1-8, 2015
Determining the control circuitry of redox metabolism at the genome-scale
S Federowicz, D Kim, A Ebrahim, J Lerman, H Nagarajan, B Cho, ...
PLoS Genet 10 (4), e1004264, 2014
Systematic metabolic engineering of Methylomicrobium alcaliphilum 20Z for 2, 3-butanediol production from methane
AD Nguyen, IY Hwang, OK Lee, D Kim, MG Kalyuzhnaya, R Mariyana, ...
Metabolic engineering 47, 323-333, 2018
The Escherichia coli transcriptome mostly consists of independently regulated modules
AV Sastry, Y Gao, R Szubin, Y Hefner, S Xu, D Kim, KS Choudhary, ...
Nature communications 10 (1), 1-14, 2019
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Dräger, K Chen, ...
Nucleic acids research 46 (20), 10682-10696, 2018
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data
L Yang, J Tan, EJ O’Brien, JM Monk, D Kim, HJ Li, P Charusanti, ...
Proceedings of the National Academy of Sciences 112 (34), 10810-10815, 2015
Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP
D Kim, SW Seo, Y Gao, H Nam, GI Guzman, BK Cho, BO Palsson
Nucleic acids research 46 (6), 2901-2917, 2018
Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features
JH Seo, JSJ Hong, D Kim, BK Cho, TW Huang, SF Tsai, BO Palsson, ...
BMC genomics 13 (1), 679, 2012
Cellular responses to reactive oxygen species are predicted from molecular mechanisms
L Yang, N Mih, A Anand, JH Park, J Tan, JT Yurkovich, JM Monk, CJ Lloyd, ...
Proceedings of the National Academy of Sciences 116 (28), 14368-14373, 2019
Coordination-Driven Self-Assembly Using Ditopic Pyridyl–Pyrazolyl Donor and p-Cymene Ru(II) Acceptors: [2]Catenane Synthesis and Anticancer Activities
JH Jo, N Singh, D Kim, SM Cho, A Mishra, H Kim, SC Kang, KW Chi
Inorganic chemistry 56 (14), 8430-8438, 2017
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