Jose M Duarte
Jose M Duarte
RCSB PDB, UC San Diego
Verified email at
Cited by
Cited by
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
RA Gibbs, L Pachter
Nature 428 (6982), 493-521, 2004
The RCSB protein data bank: integrative view of protein, gene and 3D structural information
PW Rose, A Prlić, A Altunkaya, C Bi, AR Bradley, CH Christie, ...
Nucleic acids research, gkw1000, 2016
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
SK Burley, HM Berman, C Bhikadiya, C Bi, L Chen, L Di Costanzo, ...
Nucleic acids research 47 (D1), D464-D474, 2019
NGL viewer: web-based molecular graphics for large complexes
AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić, PW Rose
Bioinformatics 34 (21), 3755-3758, 2018
Protein Data Bank: the single global archive for 3D macromolecular structure data
Nucleic acids research 47 (D1), D520-D528, 2019
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education
SK Burley, HM Berman, C Christie, JM Duarte, Z Feng, J Westbrook, ...
Protein science 27 (1), 316-330, 2018
Protein interface classification by evolutionary analysis
JM Duarte, A Srebniak, MA Schärer, G Capitani
BMC bioinformatics 13 (1), 1-16, 2012
CMView: interactive contact map visualization and analysis
C Vehlow, H Stehr, M Winkelmann, JM Duarte, L Petzold, J Dinse, ...
Bioinformatics 27 (11), 1573-1574, 2011
RCSB Protein Data Bank: Enabling biomedical research and drug discovery
DS Goodsell, C Zardecki, L Di Costanzo, JM Duarte, BP Hudson, ...
Protein Science 29 (1), 52-65, 2020
Web-based molecular graphics for large complexes
AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić, PW Rose
Proceedings of the 21st international conference on Web3D technology, 185-186, 2016
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology …
SK Burley, C Bhikadiya, C Bi, S Bittrich, L Chen, GV Crichlow, CH Christie, ...
Nucleic acids research 49 (D1), D437-D451, 2021
Optimal contact definition for reconstruction of contact maps
JM Duarte, R Sathyapriya, H Stehr, I Filippis, M Lappe
BMC bioinformatics 11 (1), 1-10, 2010
The structural impact of cancer-associated missense mutations in oncogenes and tumor suppressors
H Stehr, SHJ Jang, JM Duarte, C Wierling, H Lehrach, M Lappe, ...
Molecular cancer 10 (1), 1-10, 2011
Defining an essence of structure determining residue contacts in proteins
R Sathyapriya, JM Duarte, H Stehr, I Filippis, M Lappe
PLoS computational biology 5 (12), e1000584, 2009
A PDB-wide, evolution-based assessment of protein-protein interfaces
K Baskaran, JM Duarte, N Biyani, S Bliven, G Capitani
BMC Structural Biology 14 (1), 1-11, 2014
Automated evaluation of quaternary structures from protein crystals
S Bliven, A Lafita, A Parker, G Capitani, JM Duarte
PLoS computational biology 14 (4), e1006104, 2018
An analysis of oligomerization interfaces in transmembrane proteins
JM Duarte, N Biyani, K Baskaran, G Capitani
BMC structural biology 13 (1), 1-11, 2013
Assessment of protein assembly prediction in CASP12
A Lafita, S Bliven, A Kryshtafovych, M Bertoni, B Monastyrskyy, JM Duarte, ...
Proteins: Structure, Function, and Bioinformatics 86, 247-256, 2018
MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures
AR Bradley, AS Rose, A Pavelka, Y Valasatava, JM Duarte, A Prlić, ...
PLoS computational biology 13 (6), e1005575, 2017
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
G Glusman, PW Rose, A Prlić, J Dougherty, JM Duarte, AS Hoffman, ...
Genome medicine 9 (1), 1-10, 2017
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