Zhanwen Li
Zhanwen Li
University of California, Reverside
Verified email at medsch.ucr.edu - Homepage
Cited by
Cited by
FFAS03: a server for profile–profile sequence alignments
L Jaroszewski, L Rychlewski, Z Li, W Li, A Godzik
Nucleic acids research 33 (suppl_2), W284-W288, 2005
Three-dimensional structural view of the central metabolic network of Thermotoga maritima
Y Zhang, I Thiele, D Weekes, Z Li, L Jaroszewski, K Ginalski, AM Deacon, ...
Science 325 (5947), 1544-1549, 2009
FFAS server: novel features and applications
L Jaroszewski, Z Li, X Cai, C Weber, A Godzik
Nucleic acids research 39 (suppl_2), W38-W44, 2011
Exploration of uncharted regions of the protein universe
L Jaroszewski, Z Li, SS Krishna, C Bakolitsa, J Wooley, AM Deacon, ...
PLoS Biol 7 (9), e1000205, 2009
Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli
RL Chang, K Andrews, D Kim, Z Li, A Godzik, BO Palsson
Science 340 (6137), 1220-1223, 2013
FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking
D Xu, L Jaroszewski, Z Li, A Godzik
Bioinformatics 30 (5), 660-667, 2014
bNAber: database of broadly neutralizing HIV antibodies
AM Eroshkin, A LeBlanc, D Weekes, K Post, Z Li, A Rajput, ST Butera, ...
Nucleic acids research 42 (D1), D1133-D1139, 2014
Using an alignment of fragment strings for comparing protein structures
I Friedberg, T Harder, R Kolodny, E Sitbon, Z Li, A Godzik
Bioinformatics 23 (2), e219-e224, 2007
Structural determinants of limited proteolysis
MD Kazanov, Y Igarashi, AM Eroshkin, P Cieplak, B Ratnikov, Y Zhang, ...
Journal of proteome research 10 (8), 3642-3651, 2011
AIDA: ab initio domain assembly server
D Xu, L Jaroszewski, Z Li, A Godzik
Nucleic acids research 42 (W1), W308-W313, 2014
PDBFlex: exploring flexibility in protein structures
T Hrabe, Z Li, M Sedova, P Rotkiewicz, L Jaroszewski, A Godzik
Nucleic acids research 44 (D1), D423-D428, 2016
Modeling and analyzing three-dimensional structures of human disease proteins
Y Ye, Z Li, A Godzik
Biocomputing 2006, 439-450, 2006
AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain–domain interaction prediction
D Xu, L Jaroszewski, Z Li, A Godzik
Bioinformatics 31 (13), 2098-2105, 2015
Flexible Structural Neighborhood—a database of protein structural similarities and alignments
Z Li, Y Ye, A Godzik
Nucleic acids research 34 (suppl_1), D277-D280, 2006
POSA: a user-driven, interactive multiple protein structure alignment server
Z Li, P Natarajan, Y Ye, T Hrabe, A Godzik
Nucleic acids research 42 (W1), W240-W245, 2014
Putative type IV secretion genes in Bacillus anthracis
M Grynberg, Z Li, E Szczurek, A Godzik
Trends in microbiology 15 (5), 191-195, 2007
Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase
A Sheydina, RY Eberhardt, DJ Rigden, Y Chang, Z Li, CC Zmasek, ...
BMC bioinformatics 15 (1), 112, 2014
Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets
M Sedova, M Iyer, Z Li, L Jaroszewski, KW Post, T Hrabe, E Porta-Pardo, ...
Nucleic acids research 47 (D1), D895-D899, 2019
Large scale analysis of smoking-induced changes in the tumor immune microenvironment
A Alisoltani, X Qiu, L Jaroszewski, M Sedova, Z Li, A Godzik
bioRxiv, 2020
FATCAT 2.0: towards a better understanding of the structural diversity of proteins
Z Li, L Jaroszewski, M Iyer, M Sedova, A Godzik
Nucleic Acids Research, 2020
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