|Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0|
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature protocols 6 (9), 1290, 2011
|BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions|
J Schellenberger, JO Park, TM Conrad, BØ Palsson
BMC bioinformatics 11 (1), 213, 2010
|Large-scale in silico modeling of metabolic interactions between cell types in the human brain|
NE Lewis, G Schramm, A Bordbar, J Schellenberger, MP Andersen, ...
Nature biotechnology 28 (12), 1279-1285, 2010
|Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions|
A Bordbar, NE Lewis, J Schellenberger, BØ Palsson, N Jamshidi
Molecular systems biology 6 (1), 422, 2010
|Use of randomized sampling for analysis of metabolic networks|
J Schellenberger, BØ Palsson
Journal of biological chemistry 284 (9), 5457-5461, 2009
|Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli|
AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ...
Metabolic engineering 12 (3), 173-186, 2010
|Elimination of thermodynamically infeasible loops in steady-state metabolic models|
J Schellenberger, NE Lewis, BØ Palsson
Biophysical Journal 100 (3), 544-553, 2011
|Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies|
ND Price, J Schellenberger, BO Palsson
Biophysical journal 87 (4), 2172-2186, 2004
|Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery|
I Thiele, RMT Fleming, A Bordbar, J Schellenberger, BØ Palsson
Biophysical journal 98 (10), 2072-2081, 2010
|Minimal metabolic pathway structure is consistent with associated biomolecular interactions|
A Bordbar, H Nagarajan, NE Lewis, H Latif, A Ebrahim, S Federowicz, ...
Molecular systems biology 10 (7), 737, 2014
|Predicting outcomes of steady-state 13 C isotope tracing experiments using Monte Carlo sampling|
J Schellenberger, DC Zielinski, W Choi, S Madireddi, V Portnoy, DA Scott, ...
BMC systems biology 6 (1), 1-14, 2012
|Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA|
Annals of Oncology, 2020
|Genome-wide cell-free DNA (cfDNA) methylation signatures and effect on tissue of origin (TOO) performance.|
MC Liu, A Jamshidi, O Venn, AP Fields, MC Maher, G Cann, H Amini, ...
Journal of Clinical Oncology 37 (15_suppl), 3049-3049, 2019
|Monte Carlo simulation in systems biology|
UC San Diego, 2010
|Expanding an audience for an advertising campaign|
J Schellenberger, S Kshetramade, K Cao, A Kannan, K Liu, H Liu, C Li, ...
US Patent App. 14/643,431, 2016
|Online advertisement forecasting using targeted messages|
J Chen, T Cui, Z Deng, S You, D Kumar, D Guangyu, S Kshetramade, ...
US Patent App. 14/642,586, 2016
|Jan Schellenberger, Nathan E. Lewis, and Bernhard Ø. Palsson|
S Lecuyer, R Rusconi, Y Shen, A Forsyth, H Vlamakis, R Kolter, HA Stone
Biophysical Journal 100, 1381, 2011
|Matching entities during data migration|
K Cao, D Wang, BBL Kuang, G Seetharama, MR Thakur, ...
US Patent 10,445,061, 2019
|Identifying actions to address performance issues in a content item delivery system|
Y Gao, LP Wu, J Schellenberger, H Gao
US Patent App. 15/800,007, 2019
|Identifying potential computer system problems using machine learning techniques|
J Schellenberger, H Gao
US Patent 10,152,363, 2018