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Leonardo Collado-Torres
Leonardo Collado-Torres
Verified email at libd.org - Homepage
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Cited by
Cited by
Year
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ...
Nucleic Acids Research 39 (suppl 1), D98, 2011
4522011
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
3312017
Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis
AE Jaffe, RE Straub, JH Shin, R Tao, Y Gao, L Collado-Torres, ...
Nature neuroscience 21 (8), 1117-1125, 2018
2412018
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
KR Maynard, L Collado-Torres, LM Weber, C Uytingco, BK Barry, ...
Nature neuroscience 24 (3), 425-436, 2021
1902021
Developmental regulation of human cortex transcription and its clinical relevance at single base resolution
AE Jaffe, J Shin, L Collado-Torres, JT Leek, R Tao, C Li, Y Gao, Y Jia, ...
Nature neuroscience 18 (1), 154-161, 2015
1662015
Regional heterogeneity in gene expression, regulation, and coherence in the frontal cortex and hippocampus across development and schizophrenia
L Collado-Torres, EE Burke, A Peterson, JH Shin, RE Straub, A Rajpurohit, ...
Neuron 103 (2), 203-216. e8, 2019
1132019
Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus
EA Shank, V Klepac-Ceraj, L Collado-Torres, GE Powers, R Losick, ...
Proceedings of the National Academy of Sciences 108 (48), E1236-E1243, 2011
1112011
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ...
Genome biology 17 (1), 1-14, 2016
1052016
Altered expression of histamine signaling genes in autism spectrum disorder
C Wright, JH Shin, A Rajpurohit, A Deep-Soboslay, L Collado-Torres, ...
Translational psychiatry 7 (5), e1126-e1126, 2017
832017
Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs
EE Burke, JG Chenoweth, JH Shin, L Collado-Torres, SK Kim, N Micali, ...
Nature communications 11 (1), 1-14, 2020
782020
Rail-RNA: scalable analysis of RNA-seq splicing and coverage
A Nellore, L Collado-Torres, AE Jaffe, J Alquicira-Hernández, C Wilks, ...
Bioinformatics 33 (24), 4033-4040, 2017
742017
Flexible expressed region analysis for RNA-seq with derfinder
L Collado-Torres, A Nellore, AC Frazee, C Wilks, MI Love, B Langmead, ...
Nucleic acids research 45 (2), e9-e9, 2017
662017
Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation
AJ Price, L Collado-Torres, NA Ivanov, W Xia, EE Burke, JH Shin, R Tao, ...
Genome biology 20 (1), 1-20, 2019
562019
Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods
C Wright, A Rajpurohit, EE Burke, C Williams, L Collado-Torres, M Kimos, ...
BMC genomics 20 (1), 1-21, 2019
542019
Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk
AE Jaffe, DJ Hoeppner, T Saito, L Blanpain, J Ukaigwe, EE Burke, ...
Nature neuroscience 23 (4), 510-519, 2020
482020
Improving the value of public RNA-seq expression data by phenotype prediction
SE Ellis, L Collado-Torres, A Jaffe, JT Leek
Nucleic acids research 46 (9), e54-e54, 2018
462018
Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer’s disease
SA Semick, RA Bharadwaj, L Collado-Torres, R Tao, JH Shin, ...
Acta neuropathologica 137 (4), 557-569, 2019
442019
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor
L Collado-Torres, A Nellore, AE Jaffe
F1000Research 6, 2017
442017
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
MN Tran, KR Maynard, A Spangler, LA Huuki, KD Montgomery, ...
Neuron 109 (19), 3088-3103. e5, 2021
392021
recount3: summaries and queries for large-scale RNA-seq expression and splicing
C Wilks, SC Zheng, FY Chen, R Charles, B Solomon, JP Ling, EL Imada, ...
Genome biology 22 (1), 1-40, 2021
362021
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