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Ryan Lincoln Clark
Ryan Lincoln Clark
Senior Scientist, Nimble Therapeutics
Verified email at wisc.edu
Title
Cited by
Cited by
Year
Design of synthetic human gut microbiome assembly and butyrate production
RL Clark, BM Connors, DM Stevenson, SE Hromada, JJ Hamilton, ...
Nature communications 12 (1), 3254, 2021
1102021
Microbial interaction network inference in microfluidic droplets
RH Hsu, RL Clark, JW Tan, JC Ahn, S Gupta, PA Romero, OS Venturelli
Cell systems 9 (3), 229-242. e4, 2019
972019
A metabolic pathway for catabolizing levulinic acid in bacteria
JM Rand, T Pisithkul, RL Clark, JM Thiede, CR Mehrer, DE Agnew, ...
Nature microbiology 2 (12), 1624-1634, 2017
972017
Light-optimized growth of cyanobacterial cultures: growth phases and productivity of biomass and secreted molecules in light-limited batch growth
RL Clark, LL McGinley, HM Purdy, TC Korosh, JL Reed, TW Root, ...
Metabolic engineering 47, 230-242, 2018
502018
Engineering photosynthetic production of L-lysine
TC Korosh, AL Markley, RL Clark, LL McGinley, KD McMahon, BF Pfleger
Metabolic engineering 44, 273-283, 2017
452017
A roadmap for the synthesis of separation networks for the recovery of bio-based chemicals: matching biological and process feasibility
KM Yenkie, WZ Wu, RL Clark, BF Pfleger, TW Root, CT Maravelias
Biotechnology Advances 34 (8), 1362-1383, 2016
422016
Negative interactions determine Clostridioides difficile growth in synthetic human gut communities
S Hromada, Y Qian, TB Jacobson, RL Clark, L Watson, N Safdar, ...
Molecular systems biology 17 (10), e10355, 2021
37*2021
High-CO2 Requirement as a Mechanism for the Containment of Genetically Modified Cyanobacteria
RL Clark, GC Gordon, NR Bennett, H Lyu, TW Root, BF Pfleger
ACS synthetic biology 7 (2), 384-391, 2018
352018
Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics
M Baranwal, RL Clark, J Thompson, Z Sun, AO Hero, OS Venturelli
Elife 11, e73870, 2022
32*2022
Insights into the industrial growth of cyanobacteria from a model of the carbon‐concentrating mechanism
RL Clark, JC Cameron, TW Root, BF Pfleger
AIChE Journal 60 (4), 1269-1277, 2014
212014
The role of oxidation catalyst in dual-catalyst bed for after-treatment of lean burn natural gas exhaust
P Gawade, AMC Alexander, R Clark, US Ozkan
Catalysis today 197 (1), 127-136, 2012
142012
Control points for design of taxonomic composition in synthetic human gut communities
BM Connors, J Thompson, S Ertmer, RL Clark, BF Pfleger, OS Venturelli
Cell Systems 14 (12), 1044-1058. e13, 2023
9*2023
Under‐Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle‐Based Approach for Microscale Cell Culture
C Li, M Humayun, GM Walker, KY Park, B Connors, J Feng, ...
Advanced Science 9 (10), 2104510, 2022
92022
Construction and Operation of an Affordable Laboratory Photobioreactor System for Simultaneous Cultivation of up to 12 Independent 1 L Cyanobacterial Cultures
RL Clark, LL McGinley, DF Quevedo, TW Root, BF Pfleger
bioRxiv, 153023, 2017
22017
Simultaneous detection and quantification of multiple pathogen targets in wastewater
G Rao, D Capone, K Zhu, A Knoble, Y Linden, R Clark, A Lai, J Kim, ...
PLOS Water 3 (2), e0000224, 2024
2024
Simultaneous detection and quantification of multiple pathogen targets in wastewater. PLOS Water 3 (2): e0000224
G Rao, D Capone, K Zhu, A Knoble, Y Linden, R Clark
2024
Public toilets have reduced enteric pathogen hazards in San Francisco. PLOS Water 2 (8): e0000152
T Barker, D Capone, HK Amato, R Clark, A Henderson, DA Holcomb
2023
A Theory-Based Approach to Industrial Cultivation of Cyanobacteria
RL Clark
The University of Wisconsin-Madison, 2017
2017
Exploration of Reduction Catalysis for the Elimination of Nitrogen Oxides from Engine Exhaust
R Clark
The Ohio State University, 2012
2012
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Articles 1–19